Assay type 'Proteomics'

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17 Assays visible to you, out of a total of 31
No description specified

Contributor: Sandra Maass

Assay type: Proteomics

Technology type: 2D Gel Electrophoresis

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No description specified
No description specified

Contributor: Sandra Maass

Assay type: Proteomics

Technology type: Mass Spectrometry

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Samples obtained form the central fermentation facility of Sulfosys have been compared using iTRAQ (isobaric tag for relative and absolute quantification). A pilot experiment resulted in creation of SOP and initial data on cells grown at 70 and 80C

Some examples of proteomics templates for Mass Spectrometry data that conform to the MIAPE specification

We use BSA115 strain which lacks RsbU and RsbW proteins. Therefore, there is limited post-transcriptional regulation of sigmaB activity.
SigmaB itself is placed downstream of Pspac, inducible by IPTG. The lacZ reporter gene is downstream of Pctc promoter.
IPTG concentrations of 0.1, 0.2 and 1 mM are added in mid-exponential phase at an OD of appr. 0.3. The whole experiment runs for about eight hours.

No description specified

Contributor: Jay Moore

Assay type: Proteomics

Technology type: Gas Chromatography Mass Spectrometry

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Investigation of all steady state pH-values between pH 5.7 and 4.5 (pH 5.5, 5.3, 5.1, 4.9, 4.7).

For analyzing the binding of CcpA-HPrSer46P-complexes to various cre-elements, Surface Plasmon Resonance was used. All operations were carried out on a Biacore X instrument (Biacore, Uppsala, Sweden). Biotinylated cre DNA was coupled on a Neutravidin coated chip in flowcell two, a biotinylated reference DNA in flowcell one. For visualizing only the interactions of the CcpA-HPrSer46P-complex with the cre elements, CcpA was saturated with 50µM HPrSer46P. Titrations were carried out with 5-100nM
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Contributor: Maike Bartholomae

Assay type: Protein-protein Interaction

Technology type: Surface Plasmon Resonance

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Absolute quantification of proteins using heavy labeled QconCAT as an internal standard and quantifying the native proteins in the complex sample via scheduled Multiple Reaction Monitoring(MRM) .

Contributor: Praveen Kumar Sappa

Assay type: Proteomics

Technology type: Liquid Chromatography Mass Spectrometry

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Examples of proteomics templates for gele electrophoresis data that conform to the MIAPE-GE specification

Contributor: Katy Wolstencroft

Assay type: Proteomics

Technology type: Electrophoresis

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No description specified

Plant material
The same plant material used for transcriptome analysis in (Flis et al., 2016) was the basis of our proteome study. Briefly, Arabidopsis thaliana Col-0 plants were grown on GS 90 soil mixed in a ratio 2:1 (v/v) with vermiculite. Plants were grown for 1 week in a 16 h light (250 μmol m−2 s−1, 20 °C)/8 h dark (6 °C) regime followed by an 8 h light (160 μmol m−2 s−1, 20 °C)/16 h dark (16 °C) regime for one week. Plants were then replanted with five seedlings per pot, transferred for
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Proteomics data for N15 incorporation into protein in Ostreococcus grown in 12L:12D light:dark cycles.

Contributor: Daniel Seaton

Assay type: Proteomics

Technology type: Mass Spectrometry

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Quantitative proteomic analysis of Cyanothece ATCC51142 grown in 12L:12D light:dark cycles, using partial metabolic labeling and LC-MS analysis.

Contributor: Daniel Seaton

Assay type: Proteomics

Technology type: Mass Spectrometry

Snapshots: No snapshots

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