Projects
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This project collects and maintains metadata templates designed and used at the UMass Chan BioImage DMS Core and built in collaboration with the CBI Open Science Project. The templates are based on the REMBI recommendations and on the NBO-Q Microscopy Metadata specifications. These templates contribute to FAIR bioimaging data in North America, and are meant to be utilized to support image data annotation in the OMERO database.
Programme: Independent Projects
Public web page: Not specified
Model-based design of a biorefinery platform to valorise agrifood organic waste into odd-chain volatile fatty acids integrating technical and environmental criteria
The conversion of organic wastes by anaerobic fermentation (the so-called carboxylate platform) is one of the promising emerging biorefineries that allows valorising organic carbon to volatile fatty acids (VFA), which can be further processed as chemicals, biopolymers and biofuels. A major obstacle to the widespread of the carboxylate ...
Programme: Targeted VFA production from (waste) waters - Biogroup
Public web page: https://biogroup.usc.es/ODDITY
Start date: 1st Dec 2022
End date: 30th Nov 2024
The BioRECIPE (Biological system Representation for Evaluation, Curation, Interoperability, Preserving, and Execution) knowledge representation format was introduced to facilitate seamless human-machine interaction while creating, verifying, evaluating, curating, and expanding executable models of intra- and intercellular signaling. This format allows a human user to easily preview and modify any model component, while it is at the same time readable by machines and can be processed by a suite ...
Programme: Independent Projects
Public web page: https://melody-biorecipe.readthedocs.io/en/latest/introduction.html
Programme: Independent Projects
Public web page: Not specified
Mission: We perform cutting-edge research on data generated by novel biomolecular technologies to address questions in pneumology. Towards this, we use biological high-throughput data, i.e., OMICs data, to gain insights into molecular and phenotypic traits and diseases using computational methods. We combine data, methodology and their applications in pneumology through interdisciplinary collaboration with mathematicians, computer scientists, biologists and physicians.
Programme: Research Center Borstel
Public web page: https://fz-borstel.de/index.php/en/sitemap/service/data-science
Real-time smart monitoring of bioprocesses for efficient conversion of organic carbon to volatile fatty acids
Programme: Targeted VFA production from (waste) waters - Biogroup
Public web page: https://biogroup.usc.es/WATCHER
FAIRDOM will establish a support and service network for European Systems Biology. We will serve projects in standardising, managing and disseminating data and models in a FAIR manner: Findable, Accessible, Interoperable and Reusable.
Programme: Applied Lipidomics Göttingen
Public web page: Not specified
nfdi4health aims to create the most comprehensive inventory of German epidemiological, public health and clinical trial data to date. It builds a centralised data catalogue with elaborate search functionalities, sophisticated data access management, and a data analysis toolbox, while respecting stringent requirements for privacy concerning personal health data. Standardisation services ensure a high degree of interoperability. Use cases covering prototypical study types and areas of research show ...
Programme: nfdi4health - German National Research Data Infrastructure for Personal Health Data
Public web page: https://www.nfdi4health.de
Start date: 1st Jul 2020
SDBV group using Hub
Programme: Independent Projects
Public web page: Not specified
Based on the combination of sensor and big data revolutions, PHENET (HE INFRA-TECH) will equip crop and ecosystems RI with innovative services based on tools and methods developed in the frame of the project and allowing enhanced capacity to future-proofing agroecosystems. These services will be excellent tools for users addressing environmental and societal challenges such as climate change adaptation / mitigation and agroecology transition.
Programme: Independent Projects
Public web page: https://www.phenet.eu/en
Programme: Independent Projects
Public web page: Not specified
Programme: Independent Projects
Public web page: Not specified
Further proteomic data and ATP calculation
Programme: BaPro
Public web page: Not specified
Development of a lactic acid centred biorefinery scheme to valorize flexibly organic waste streams into biochemicals
Programme: Targeted VFA production from (waste) waters - Biogroup
Public web page: Not specified
Testing out FAIRDOM-Seek
Programme: Independent Projects
Public web page: Not specified
Programme: Independent Projects
Public web page: Not specified
Programme: Independent Projects
Public web page: Not specified
Cyanobacteria are the only prokaryotes performing oxygenic photosynthesis. Theyhad and have tremendous influence on the biogeochemical cycles on Earth. Recently,cyanobacteria are increasingly investigated as cell factories for a sustainableeconomy. Despite their global, environmental and rising economic importance, ourknowledge on the regulation of their primary metabolism is fragmented.Cyanobacteria switch between photoautotrophic and heterotrophic modes ofmetabolism during day/night cycles or ...
Programme: DFG founded projects
Public web page: https://gepris.dfg.de/gepris/projekt/397695561
Start date: 1st Sep 2018
Ionizing radiation (IR) leads to DNA double-strand breaks and can therefore be used as cancer treatment. However, some tumors are less responsive to radiation treatment because of their underlying molecular profile. Our ultimate goal is to understand the reaction of lung cancer cells with different phenotypes to IR on a molecular level to then provide the best therapy options for lung cancer patients with IR therapy.
Programme: This Project is not associated with a Programme
Public web page: https://www.sbi.uni-rostock.de/research/projects/detail/74
Start date: 1st Aug 2023
End date: 31st Dec 2027
Public web page: Not specified
MESI-Review 2024
Programme: Independent Projects
Public web page: Not specified
The group around Nicole Radde specializes in the modeling, analysis, and simulation of biochemical systems. This especially includes parameter optimization and identification.
Programme: de.NBI Systems Biology Service Center (de.NBI-SysBio)
Public web page: https://www.ist.uni-stuttgart.de/research/group-of-nicole-radde/
Start date: 11th Feb 2020
Programme: Independent Projects
Public web page: Not specified
MESI-STRAT: Systems Medicine of Metabolic-Signaling Networks -A New Concept for Breast Cancer Patient Stratification. Breast cancer is a complex disease with high prevalence in the European Union and world-wide. 75%-80 of the patients have estrogen receptor-positive (ER)-positive tumors and are treated with endocrine therapies. Endocrine therapies, which block ER-driven tumor growth, show high efficacy. Yet, a significant proportion of the patients will eventually relapse with metastatic breast ...
Programme: This Project is not associated with a Programme
Public web page: http://www.mesi-strat.eu
Cell biological and proteogenomic study of the chloroplast of the marine, bloom-forming dinoflagellate P. cordatum
Programme: Independent Projects
Public web page: Not specified
Start date: 4th Jul 2023
End date: 31st Aug 2024
This data contains fish data such as fish abundance, fish community structure data, fish species data obtained in the study, fish productivity and also fish length-weight relationships.
Programme: Independent Projects
Public web page: Not specified
This research discusses what is the status of fisheries provisioning services in Jatigede Reservoir and what anthropogenic pressures in the form of community activities affect the status of fisheries provisioning services.
Programme: Independent Projects
Public web page: Not specified