SOPs

173 SOPs visible to you, out of a total of 242

We have adapted the definitions of terms in [ISA best practice][1] and [programmes and projects][2]:

Programme = Overarching research theme (The Digital Salmon)
Project = Research grant (DigiSal, GenoSysFat)
Investigation = a particular biological process, phenomenon or thing
(typically corresponds to [plans for] one or more closely related papers)
Study = experiment whose design reflects a specific biological research question
Assay = standardized measurement or diagnostic experiment using a
...

Creators: Jon Olav Vik, Natalie Stanford

Contributor: Jon Olav Vik

Extraction and quantitative analysis of proteins from FFPE tissue

Creators: Olga Krebs, Ruben Van Heck

Contributor: Olga Krebs

Methods for GC ToF sample preparation: supernatant, cell pellets, derivatization, data acquisition, peak identification

Creator: Niklas Tenhaef

Contributor: Niklas Tenhaef

Enzymatic MTP-based D-xylose assay using XDH/XMR enzyme mix from Megazymes D-xylose kit

Creator: Niklas Tenhaef

Contributor: Niklas Tenhaef

No description specified

Creator: Madlen Matz-Soja

Contributor: Madlen Matz-Soja

Initial configuration and parameters of the Bioleaching

Creator: Stephan Christel

Contributor: Stephan Christel

This file describes the naming system used to uniquely identify samples

Creator: Stephan Christel

Contributor: Stephan Christel

Method extraction of intracellular metabolites in Lactococcus lactis

Creator: Martijn Bekker

Contributor: JERM

Method extraction of intracellular metabolites in Lactococcus lactis

Creator: Martijn Bekker

Contributor: JERM

Method for transformation of plasmids into Lactococcus lactis

Creator: Martijn Bekker

Contributor: JERM

Method for synthesis of LAB-medium sued for the SYSMO-LAB project

Creator: Martijn Bekker

Contributor: JERM

Method for analysis of various organic acids in the medium

Creator: Martijn Bekker

Contributor: JERM

No description specified

Creators: Theresa Kouril, Andreas Albersmeier, CeBiTech, University Bielefeld, Germany; Jörn Kalinowski, CeBiTech, University Bielefeld;

Contributor: Theresa Kouril

Protein extraction, iTRAQ labeling, peptides separation, mass spectrometry and data analysis

Creators: Theresa Kouril, Phil Wright, Trong Khoa Pham

Contributor: Theresa Kouril

No description specified

Creator: Soeren Bellenberg

Contributor: Soeren Bellenberg

A Standard Operating Procedure (SOP) is a document consisting of step-by-step information on how to execute a task. An existing SOP may need to just be modified and updated.

Creator: Olga Krebs

Contributor: JERM

Use this template when you upload RNA sequencing data.
Email : 31 May 2016
More columns need to be added PE/SE etc?

Creators: Graceline Tina Kirubakaran, Jon Olav Vik, Thomas Harvey, Sandve Simen, Hanne Hellerud Hansen

Contributor: Graceline Tina Kirubakaran

Source: Tom Harvey
[E- mail from Jon Olav 19 May 2016]

Creators: Graceline Tina Kirubakaran, Thomas Harvey, Jacob Seilø Torgersen

Contributor: Graceline Tina Kirubakaran

This protocol details the RNAseq sample preparation starting with mRNA and ending with quality control of finished libraries. This protocol was used specifically for virus mRNA samples related to ORFeome lab group.

Creators: Olga Krebs, Marcia Sanders, Anne Beall

Contributor: Olga Krebs

Source: Hanne Hellerud Hansen [ Email sent on May 2. 2016]

This protocol was followed for library prep in https://fairdomhub.org/data_files/1341
The file explains the lab procedure/protocol that was followed in the lab for "TruSeq stranded mRNA sample preparation" by Hanne Hellerud Hansen with comments.

Creators: Graceline Tina Kirubakaran, Hanne Hellerud Hansen

Contributor: Graceline Tina Kirubakaran

No description specified

Creator: Tomas Fiedler

Contributor: Tomas Fiedler

No description specified

Creator: Tomas Fiedler

Contributor: Tomas Fiedler

Protocol for applying a glucose perturbation in Streptococcus pyogenes.

Creator: Martijn Bekker

Contributor: Martijn Bekker

Perturbation of starved cells with glucose. Concentrations of intra- and extracellular metabolites are followed in time.

Creator: Martijn Bekker

Contributor: Martijn Bekker

No description specified

Creator: Martijn Bekker

Contributor: JERM

No description specified

Creator: Martijn Bekker

Contributor: JERM

No description specified

Creator: Martijn Bekker

Contributor: JERM

No description specified

Creator: Martijn Bekker

Contributor: JERM

No description specified

Creator: Martijn Bekker

Contributor: JERM

This protocol for applying glucose perturbations works for Lactococcus lactis and Enterococcus faecalis

Creator: Martijn Bekker

Contributor: Martijn Bekker

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