Models

137 Models visible to you, out of a total of 181
No description specified

Creator: Robert Muetzelfeldt

Contributor: Robert Muetzelfeldt

Genome wide metabolic network model for Clostridium acetobutylicum

Creators: Peter Götz, insilico biotechnology AG

Contributor: JERM

This record includes Matlab and Simile format versions of the Arabidopsis Framework Model version 1, FMv1 (Chew et al, PNAS 2014; http://www.pnas.org/content/early/2014/08/27/1410238111), copied from the PlaSMo resource (www.plasmo.ed.ac.uk), PLM_ID=78.

The FMv1 links the following sub-models:
1. Arabidopsis leaf carbohydrate model (Rasse and Tocquin) - Carbon Dynamic Model
2. Part of the Christophe et al 2008 Functional-Structural Plant Model
3. Chew et al 2012 Photothermal Model
4. Salazar et
...

Creators: Andrew Millar, Yin Hoon Chew

Contributor: Andrew Millar

A model of the circadian regulation of starch turnover, as published in Seaton, Ebenhoeh, Millar, Pokhilko, "Regulatory principles and experimental approaches to the circadian control of starch turnover", J. Roy. Soc. Interface, 2013. This model is referred to as "Model Variant 2".
The other model variants are all available from www.plasmo.ed.ac.uk as stated in the publication.
Note that the 'P2011' circadian clock model was modified for this publication (as described), in order to replicate the
...

Creators: Andrew Millar, Daniel Seaton

Contributor: Andrew Millar

Matlab model (could not be represented in SBML) from publication with abstract:
Clock-regulated pathways coordinate the response of many developmental processes to changes in photoperiod and temperature. We model two of the best-understood clock output pathways in Arabidopsis, which control key regulators of flowering and elongation growth. In flowering, the model predicted regulatory links from the clock to CYCLING DOF FACTOR 1 (CDF1) and FLAVIN-BINDING, KELCH REPEAT, F-BOX 1 (FKF1) transcription.
...

Creators: Andrew Millar, Daniel Seaton

Contributor: Andrew Millar

This version is P2011.1.2, model ID PLM_71 version 1. Dynamics identical to P2011.1.1 of the Pokhilko et al. 2012 publication.

http://www.plasmo.ed.ac.uk/plasmo/models/download.shtml?accession=PLM_71&version=1

Creator: Andrew Millar

Contributor: Andrew Millar

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

Metabolic model of Sulfolobus solfataricus P2 in the SBML (sbml) and metano (txt, sce, fba) format. Scenarios are specific for growth on D-glucose or caseinhydrolysate as sole carbon source.

Creator: Helge Stark

Contributor: Helge Stark

Metabolic model of Sulfolobus solfataricus P2 in the SBML (xml) and metano (txt, sce, fba) format. Scenarios are specific for growth on D-glucose or L-fucose as sole carbon source. Different theoretical routes of L-fucose degradation were modeled (E. coli-like, Xanthomonas-like and lactaldehyde-forming). Highest overall agreement between the model and experimental data was observed for the lactaldehyde-forming route.

Creators: Jacqueline Wolf, Helge Stark, Dietmar Schomburg

Contributor: Jacqueline Wolf

This is BIOMD0000000005.

Creators: Ron Henkel, Dagmar Waltemath

Contributor: Ron Henkel

No description specified

Creator: Matthias König

Contributor: Matthias König

The model presents a multi-compartmental (mesophyll, phloem and root) metabolic model of growing Arabidopsis thaliana. The flux balance analysis (FBA) of the model quantifies: sugar metabolism, central carbon and nitrogen metabolism, energy and redox metabolism, proton turnover, sucrose translocation from mesophyll to root and biomass growth under both dark- and light-growth conditions with corresponding growth either on starch (in darkness) or on CO2 (under light). The FBA predicts that
...

Creators: Maksim Zakhartsev, Olga Krebs, Irina Medvedeva, Ilya Akberdin, Yuriy Orlov

Contributor: Maksim Zakhartsev

E.coli Core model, with additional reactions added to generate the beta-oxadation cycle. This is the basic model used in RobOKoD: microbial strain design for (over)production of target compounds (http://fairdomhub.org/publications/236).

Creator: Natalie Stanford

Contributor: Natalie Stanford

to reproduce Figure 4

Creator: Dagmar Waltemath

Contributor: Dagmar Waltemath

No description specified

Creator: Antoine Buetti-Dinh

Contributor: Antoine Buetti-Dinh

SBML model as published on BioModels.

Creators: Dagmar Waltemath, Melanie Stefan

Contributor: Dagmar Waltemath

A model fragment generated from SABIO RK, and some "data" to fit the model to.

Creator: Sven Sahle

Contributor: Sven Sahle

constrained based model for E. coli

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

Here is a kinetic model (in COPASI format) of L. lactis glycolysis.

Creator: Mark Musters

Contributor: Mark Musters

No description specified

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creator: Jacky Snoep

Contributor: Jacky Snoep

Batch and chemostat model of L lactis. Scope of the model is to provide a mechanistic explanation of the switch between mixed acid and homolactic fermentation.

Creator: Domenico Bellomo

Contributor: Domenico Bellomo

No description specified

Creator: Nadine Veith

Contributor: Nadine Veith

Powered by
Seek-new-full
(v.1.3.0)
Copyright © 2008 - 2016 The University of Manchester and HITS gGmbH