ATCC824
ATCC824
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Created: 28th Apr 2010 at 18:21
Last updated: 19th Oct 2012 at 17:57
Related items
Projects: COSMIC
Institutions: Beuth University of Applied Sciences Berlin
I am a biotechnologist with main focus on theoretical studies. Currently, I am working on the implementation of a parameter estimation algorithm on GPUs to reduce the computational burden of huge ODE systems.
I am a PAL and I am looking forward to communication with other SYSMO members.
Measurements of acetone, butanol, acetate, butyrate and ethanol taken during dynamic shift (pH 5.8, 5.5, 5.3, 5.1, 4.9, 4.7, 4.5) and at steady state (pH 5.7, 5.5, 5.3, 5.1, 4.9, 4.7, 4.5).
Contributor: Sara Jabbari
Assay type: Metabolomics
Technology type: Technology Type
Snapshots: No snapshots
Investigation of all steady state pH-values between pH 5.7 and 4.5 (pH 5.5, 5.3, 5.1, 4.9, 4.7).
Contributor: Sara Jabbari
Assay type: Proteomics
Technology type: Technology Type
Snapshots: No snapshots
Investigation of the dynamic switch at pH values between 5.8 and 4.5 (pH 5.5, 5.3, 5.1, 4.9, 4.7 and 4.5).
Comparison of the transcriptome at steady state in acidogenesis and at steady state in solventogenesis.
Contributor: Sebastian Curth
Assay type: Metabolite Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Snapshots: No snapshots
Contributor: Sebastian Curth
Assay type: Metabolite Profiling
Technology type: Liquid Chromatography-tandom Mass Spectrometry
Snapshots: No snapshots
Contributor: Sebastian Curth
Assay type: Transcriptional Profiling
Technology type: Microarray
Snapshots: No snapshots
Contributor: John Raedts
Assay type: Metabolomics
Technology type: Technology Type
Snapshots: No snapshots
Contributor: Daniel Hönicke
Assay type: Transcriptomics
Technology type: Microarray
Snapshots: No snapshots
Time-dependent simulations of the dynamic switch between acidogenesis and solventogenesis based on the metabolic network and pH-dependent regulation of the enzymes.
Steady state study of the effect of altering gene regulation on yields of end-products, focusing on butanol.
Using PCA, three components, beam size 8.
Clustering via MCL from Biolayout Express 3D
Data is taken from "Genome-Wide Gene Expression Analysis of the Switch between Acidogenesis and Solventogenesis in Continuous Cultures of Clostridium acetobutylicum." Grimmler et al. 2011
DOI: 10.1159/000320973
Cytoscape based analysis and yED based representation of clostridial Reactomes
Contributor: Sebastian Curth
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
Using Taverna for mining and MATLAB for conversion into specific formats (cytoscape, SBTOOLBOX2)
Contributor: Sebastian Curth
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
Contributor: Sebastian Curth
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
Contributor: Sebastian Curth
Biological problem addressed: Model Analysis Type
Snapshots: No snapshots
