Sulfolobus solfataricus
Details about this organism
Synonyms (0)None defined
Definitions (0)
None defined
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Strain details
| Name | Provider name | Provider's strain ID | Genotypes | Phenotypes | Synonym | Comments | Based on |
|---|---|---|---|---|---|---|---|
| P2 | Not specified | Not specified | wild-type | wild-type | Not specified | None | Not specified |
Related items
Within the e:Bio - Innovationswettbewerb Systembiologie (Federal Ministry of Education and Research (BMBF)), the SulfoSYSBIOTECH consortium (10 partners), aim to unravel the complexity and regulation of the carbon metabolic network of the thermoacidophilic archaeon Sulfolobus solfataricus (optimal growth at 80°C and pH 3) in order to provide new catalysts ‘extremozymes’ for utilization in White Biotechnology.
Based on the available S. solfataricus genome scale metabolic model (Ulas et al., 2012)
...
Programme: e:Bio
Public web page: http://www.sulfosys.com/
Silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation
Programme: SysMO
Public web page: http://sulfosys.com/
Contributor: Jacqueline Wolf
Assay type: Experimental Assay
Technology type: Enzymatic activity measurements
Investigation: L-fucose degradation in Sulfolobus solfataricus P2
Genome scale metabolic model of Sulfolobus solfataricus
specific scenario: modelling of L-fucose degradation pathways
Contributor: Jacqueline Wolf
Biological problem addressed: Metabolic network
Investigation: L-fucose degradation in Sulfolobus solfataricus P2
Contributor: Theresa Kouril
Assay type: Proteomics
Technology type: Tandem mass spectrometry
Investigation: L-fucose degradation in Sulfolobus solfataricus P2
Contributor: Theresa Kouril
Assay type: Metabolite profiling
Technology type: Gas chromatography mass spectrometry
Investigation: L-fucose degradation in Sulfolobus solfataricus P2
Contributor: Theresa Kouril
Assay type: Rna-seq profiling
Technology type: Next generation sequencing
Investigation: L-fucose degradation in Sulfolobus solfataricus P2
Model prediction of the conversion of 3PG to fructose-6-phosphate and the gluconeogenic pathway intermediates.
https://jjj.bio.vu.nl/models/experiments/kouril3_experiment-user/simulate
Contributor: Jacky Snoep
Biological problem addressed: Metabolic network
Investigation: Central Carbon Metabolism of Sulfolobus solfata...
In vitro reconstitution of the PGK, GAPHD, TPI and FBPAase enzymes from S. solfataricus
Contributor: Jacky Snoep
Biological problem addressed: Metabolic network
Investigation: Central Carbon Metabolism of Sulfolobus solfata...
Study: Model Gluconeogenesis
Contributor: Not available
Provider Name: Not specified
Provider's strain ID: Not specified
Organism: Sulfolobus solfataricus
Genotypes: wild-type
Phenotypes: wild-type
Comment: Not specified
Metabolic model of Sulfolobus solfataricus P2 in the SBML (xml) and metano (txt, sce, fba) format. Scenarios are specific for growth on D-glucose or L-fucose as sole carbon source. Different theoretical routes of L-fucose degradation were modeled (E. coli-like, Xanthomonas-like and lactaldehyde-forming). Highest overall agreement between the model and experimental data was observed for the lactaldehyde-forming route.
Creators: Jacqueline Wolf, Helge Stark, Dietmar Schomburg
Contributor: Jacqueline Wolf
Model type: Metabolic network
Model format: SBML
DownloadModel of reconstituted gluconeogenesis system in S. solfataricus based on the individual kinetic models for PGK, GAPDH, TPI, FBPAase.
Creator: Jacky Snoep
Contributor: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: SBML
Exponential decay model of gluconeogenic intermediates
Creator: Jacky Snoep
Contributor: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
Mathematical model for TPI kinetics, GAP and DHAP saturation, and inhibition with 3PG and PEP.
Creator: Jacky Snoep
Contributor: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
Mathematical model for GAPDH kinetics, BPG, NADPH, NADP, GAP and Pi saturation.
Creator: Jacky Snoep
Contributor: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
Mathematical model for FBPAase kinetics, saturation with DHAP and GAP
Creator: Jacky Snoep
Contributor: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
Mathematical model for PGK kinetics, ADP, ATP, 3PG and BPG saturation.
Creator: Jacky Snoep
Contributor: Jacky Snoep
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
