Assays
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Submitter: Sandra Maass
Assay type: Proteomics
Technology type: Mass Spectrometry
Investigation: The transition from growing to non-growing Baci...
Submitter: Sandra Maass
Assay type: Proteomics
Technology type: Mass Spectrometry
Investigation: Multiomics study of Bacillus subtilis under osm...
Absolute quantification of proteins using heavy labeled QconCAT as an internal standard and quantifying the native proteins in the complex sample via scheduled Multiple Reaction Monitoring(MRM) .
Submitter: Praveen kumar Sappa
Assay type: Proteomics
Technology type: Liquid Chromatography Mass Spectrometry
Investigation: Multiomics study of Bacillus subtilis under osm...
Further fluxes (ammonium, chloride, calcium) will be measured dependent on the capacities of the MIFE/FLISE technique.
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: Potassium uptake in Saccharomyces cerevisiae
Glucose transporter mutants were analyzed under aerobic and aerobic conditions in batch cultures with glucose as substrate. Acetate formation rates and glucose consumption rates were measured, as well as extracellular cAMP concentrations.
Submitter: Sonja Steinsiek
Assay type: Extracellular Metabolite Concentration
Technology type: Technology Type
Investigation: Analysis of the glucose transport in Escherichi...
MG1655 and mutant strains with defects in glucose transport systems were analyzed in aerobic and anaerobic batch cultures.
Submitter: Sonja Steinsiek
Assay type: Gene Expression Profiling
Technology type: Technology Type
Investigation: Analysis of the glucose transport in Escherichi...
Some examples of transcriptomics templates for Affymetrix data that conform to the MAGE-TAB specification. These templates were taken from the GEO website (http://www.ncbi.nlm.nih.gov/geo/info/spreadsheet.html) and modified to conform to the SysMO-JERM (Just enough Results Model) for transcriptomics. Using these templates will mean easier submission to GEO/ArrayExpress and greater consistency of data in SEEK.
Submitter: Katy Wolstencroft
Assay type: Transcriptomics
Technology type: Microarray
Investigation: Creating data sheet template for 'omics data
Based on Hess et al. (2006) ammonium is suspected to be transported via Trk1,2 under potassium shortage. The ammonium concentration in the medium will be determined for several time points under the conditions of Navarrete et al. (2010).
Submitter: Falko Krause
Assay type: Experimental Assay Type
Technology type: Technology Type
Investigation: K+ Starvation in Saccharomyces cerevisiae
Study: Ion Flux Changes
This document describes by-product formation rates measured in MG1655 at steady-state conditions in Infors-Multifors-Bioreactors.
Submitter: Sonja Steinsiek
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Steady state studies for different oxygen avail...
This assay describes how to analyze gene expression rates via RT-PCR.
Submitter: Sonja Steinsiek
Assay type: Gene Expression Profiling
Technology type: qRT-PCR
Investigation: Steady state studies for different oxygen avail...
ArcA phosphorylation in chemostat cultures grown at different aerobiosis levels was quantitated by Phos-tag SDS-PAGE gel analysis and subsequent immunodetection of ArcA.
Submitter: Matthew Rolfe
Assay type: Experimental Assay Type
Technology type: SDS-PAGE
Investigation: Steady state studies for different oxygen avail...
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Imaging
Investigation: Effect of Benzoic Acid on ATP Levels
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Effect of Benzoic Acid on ATP Levels
Submitter: Walter Glaser
Assay type: Metabolomics
Technology type: Technology Type
Investigation: Effect of Benzoic Acid on ATP Levels