Projects: HUMET Startup
Institutions: Centro de Investigación Príncipe Felipe
Disciplines: Bioinformatician, Modeller
Roles: Member
Expertise: Bioinformatics, Data Management, Data integration, Mathematical modelling, Genomics, Genetics, Transcriptomics, Systems Biology, Microarray analysis
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Genetics, Genomics, R, Systems Biology, Transcriptomics, Java
My scientific interests revolve around functional genomics, systems biology and the development of algorithms and software for the analysis of highthroughput data (mainly, but not restricted to, Next Generation Sequencing) and its application to the relationship between genotype and phenotype, mainly oriented to personalized and precision medicine. I am especially interested in the study of disease mechanisms and drug action mechanisms, drug repositioning and the definition of mechanismbased
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Projects: ICYSB 2015  International Practical Course in Systems Biology
Institutions: Institute of Cytology and Genetics
Disciplines: Modeller
Roles: Not specified
Expertise: Mathematical modelling, Software Engineering, Systems Biology
Tools: Computational and theoretical biology, Computational Systems Biology, Data Management, Java, ODE, Stochastic models, Scilab, Individualbased models
I am a biomodeler, PhD student. Actually, I've graduated from Novosibirsk State University on two specialities: my bachelor diploma is done in computer science and the master thesis is defended in information biology. So, I'm kind of drifting towards biology. I am a part of the Haploid Evolutionary Constructor project. Our research group studies are dedicated to the simulation of prokaryotic communities. Personally, I am involved into the simulation of spatially distributed bacterial communities
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Projects: TRANSLUCENT
Institutions: University of Applied Sciences Koblenz, Rhein Ahr Campus
Disciplines: Modeller, Bioinformatician
Roles: Member
Expertise: Ma
Tools: Thermodynamics, Machine Learning, Biophysics, R, Matlab, Computational and theoretical biology
I am working in the mathematical modeling of potassium homeostasis. In addition, we are developing tools and methods for the statistical analysis of biological data.
Projects: SysMOLAB
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Disciplines: Modeller
Roles: Postdoc
Expertise: computational structural biology, Xray crystallography Structural biology, Cheminformatics
Tools: Computational Systems Biology, parameter estimation, Computational and theoretical biology
Projects: COSMIC
Institutions: University of Nottingham
Disciplines: Modeller
Roles: Postdoc
Expertise: Mathematical modelling
Tools: Partial differential equations, ODE, Computational and theoretical biology
Projects: SysMOLAB
Institutions: University of Wageningen
Disciplines: Modeller
Roles: Not specified
Expertise: Reactor models, dynamics of biological networks., Mathematical modelling, Bioinformatics
Tools: SQL, Material balance based modeling, Mathematica, Matlab, Copasi, JWS Online, Algebraic equations, Linear equations, ODE, Partial differential equations, SBML, Metabolomics, Model organisms, Cell biology, Computational and theoretical biology, Molecular Biology
I'm a modeller, specialized in kinetic modeling of biochemical networks. My focus in the SysMOLAB consortium is on creating models of Lactococcus lactis glycolysis and couple this to other related lactic acid bacteria like Streptococcus pyogenes and Enterococcus faecalis. Besides kinetic modeling, I'm also interested in combining various modeling techniques (genomescale modeling, qualitative modeling).
Projects: MOSES
Institutions: Medical University Vienna
Disciplines: Not specified
Roles: Not specified
Expertise: Bioinformatics
Tools: PHP, SQL, R, Microarray analysis, Perl, Transcriptomics, Computational and theoretical biology, Data Management
General Bioinformatics
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical and statistical modeling, bioreactor models, dynamics of biological networks, dynamics and control of biological networks, parameter estimation, Reactor models, Mathematical modelling, Bioinformatics, Molecular Biology
Tools: evaluation of process dynamics, continuous cultivation, DIVA, differential algebraic equations, linux, Material balance based modeling, stimulus response experiments, Microarray analysis, Matlab, Linear equations, ODE, Model organisms, Single Cell analysis, SBML, Transcriptomics, Computational and theoretical biology, Bioinformatics
I'm an engineer at the MPI Magdeburg and I'm working in the field of mathematical modeling, model verification, parameter identification, model analysis and experimental design. I'm involved in two projects, KOsmoBac and PSYSMO.
Projects: KOSMOBAC
Institutions: University of Aberdeen
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical and statistical modeling, dynamics of biological networks, parameter estimation, Mathematical modelling
Tools: Stochastic models, C programming, linux, Perl, Python, Partial differential equations, ODE, Computational and theoretical biology
Physicist, working on the modelling side.
Projects: COSMIC
Institutions: University of Nottingham
Disciplines: Modeller
Roles: Not specified
Expertise: Deterministic modelling of gene regulation networks, Mathematical modelling
Tools: XPPAUT, Matlab, Computational and theoretical biology
I am a Birmingham and MRC Fellow in mathematical biology. Specialising in the modelling of gene regulation networks using both numerical and analytical approaches, my work spans a range of biological applications, from drug development to bioenergy to understanding bacterial behaviour. My MRC fellowship gave me the opportunity to gain experimental training in order to generate the complementary data required to adopt a truly interdisciplinary approach to mathematical modelling in biology.
I worked
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Projects: COSMIC, BaCellSysMO
Institutions: University of Rostock
Disciplines: Modeller
Roles: Postdoc
Expertise: Statistical Physics, Data analysis, Systems Biology, bistability, Physics, dynamics of biological networks, dynamics and control of biological networks, Mathematical modelling
Tools: data modelling, Dynamic modelling, Computational Systems Biology, Stochastic models, C programming, differential algebraic equations, Mathematica, Matlab, ODE, Computational and theoretical biology
Modelling of cellular signalling, Dynamic Motifs and Feedback, Quantitative Measures, Theoretical Aspects of Modelling Biological Systems
Projects: COSMIC, BaCellSysMO, SYSTERACT, HUMET Startup
Institutions: University of Rostock
Disciplines: Not specified
Roles: Not specified
Expertise: Data analysis Mathematical modelling Bioinformatics Systems biology, dynamics of biological networks, dynamics and control of biological networks
Tools: quantitative western blot analysis, Stochastic models, quantitative western blot analyses, differential algebraic equations, stimulus response experiments, Mathematica, Matlab, ODE, Computational and theoretical biology
Projects: COSMIC
Institutions: University of Rostock
Disciplines: Not specified
Roles: Not specified
Expertise: Bacterial metabolism  Metabolic engineering, Systems Biology, Mathematics, dynamics of biological networks, parameter estimation, Mathematical modelling
Tools: data modeling, Matlab, SBML, ODE, Computational and theoretical biology
biomathematician, PhD student at the University of Rostock, Systems Biology Group Rostock
Projects: PSYSMO
Institutions: Max Planck Institute for Dynamics of Complex Technical Systems
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematics, dynamics and control of biological networks, Mathematical modelling
Tools: Stochastic models, Fluorecence based reporter gene analyses/single cell analyses, Matlab, ODE, Computational and theoretical biology
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical modelling of biosystems and bioprocesses, Statistically and biologically inspired optimization algorithms, dynamics and control of biological networks, parameter estimation, Mathematical modelling
Tools: including:  Dynamic modelling  Parameter estimation  Optimal experimental design  Dynamic optimization, Computational Systems Biology, Mathematica, Matlab, Partial differential equations, ODE, Computational and theoretical biology
We are very interested in applying a systems approach (i.e. modelbased concepts and related computational tools) to problems from the biological domain. In particular, we are doing research in computational systems biology, targetting the following topics:
 Parameter estimation (inverse problems, model calibration) in biochemical pathways
 Optimal experimental design (optimal dynamic experiments) for Systems Biology
 Dynamic optimization (optimal control) of biosystems and bioprocesses

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Projects: KOSMOBAC
Institutions: University of Aberdeen
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematics, Programming, Physics, Mathematical modelling
Tools: Computational Systems Biology, C programming, data modeling, differential algebraic equations, Algebraic equations, ODE, Computational and theoretical biology
My background is physics engineering & biomedical engineering. I did my PhD in Surrey on the modelling of response of mammalian cells to radiation of different qualities.
I have been working at the University of Aberdeen since November 2007 as a theoreticien research fellow of the KOSMOBAC project. We are investigating the homeostasis of ions in bacteria E. coli. I have been working at a model of the buffering capacity of the cytopplasm, arising from the presence of weak acids and bases. We have
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Projects: KOSMOBAC
Institutions: University of Aberdeen
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical modelling of biosystems and bioprocesses, Mathematical modelling
Tools: Deterministic models, including: Dynamic modelling Parameter estimation Optimal experimental design Dynamic optimization, Computational Systems Biology, Stochastic models, C programming, enzymatic analyses, data modeling, linux, ODE, Computational and theoretical biology
Projects: KOSMOBAC
Institutions: University of Aberdeen
Disciplines: Not specified
Roles: Not specified
Expertise: Programming, Physics, Mathematical modelling
Tools: PDE, C programing, Stochastic models, linux, ODE, Computational and theoretical biology
Institutions: University of Tuebingen, University of Tübingen
Disciplines: Not specified
Roles: Not specified
Expertise: Data analysis, Systems Biology, Transcriptomics, Mathematical modelling, Bioinformatics
Tools: R, qtPCR, Transcriptomics, Computational and theoretical biology, Data Management, Bioinformatics
Projects: BaCellSysMO
Institutions: University of Rostock
Disciplines: Not specified
Roles: Not specified
Expertise: sensitivity analysis, Systems Biology, stress responses, Deterministic modelling of gene regulation networks, dynamics and control of biological networks, parameter estimation, Bacillus subtilis, Mathematical modelling
Tools: Dynamic modelling, Deterministic models, Stochastic models, linux, Matlab, ODE, Computational and theoretical biology, Biochemistry
Modelling of the general stress response activation cascade of sigB in B. subtilis in response to starvation.
Projects: TRANSLUCENT
Institutions: University of Applied Sciences Koblenz, Rhein Ahr Campus
Disciplines: Modeller
Roles: Not specified
Expertise: Mathematical modelling of biological systems, metal ion homeostasis, parameter estimation
Tools: R, Matlab, ODE, Computational and theoretical biology
Grammar school until 1998
199899 Alternative civilian service
19992002 Professional education as male nurse
20022007 Study of Biomathematics
2007... PhD student in TRANSLUCENT project
Projects: BaCellSysMO
Institutions: University of Stuttgart
Disciplines: Not specified
Roles: Not specified
Expertise: carbon metabolism, Signalling networks, metabolic networks, Nonlinear Dynamics, Systems Biology, stress responses, Mathematical modelling of biosystems and bioprocesses, Bacillus subtilis, Mathematical modelling, Biochemistry, Microbiology
Tools: fedbatch cultivation, Dynamic modelling, Computational Systems Biology, Deterministic models, continuous cultivation, Enzyme assay, Chromatography, Fermentation, Matlab, Mathematica, ODE, Computational and theoretical biology
I am a biologist in the lab of Prof. Reuss at the University of Stuttgart and I am working in the field of biotechnology and mathematical modelling.
Projects: BaCellSysMO
Institutions: University of Goettingen
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical modelling
Tools: SubtiWiki, Python, Computational and theoretical biology, Bioinformatics
I'm a PhD student at the lab of Prof. Dr. Jörg Stülke.
My main interest is to analyze the central metabolism of Bacillus subtilis using systems biology software.
I have developed an algorithm to find short pathways connecting sets of metabolites and I'm also involved in SubtiWiki, the wiki for all genes of Bacillus subtilis (http://subtiwiki.unigoettingen.de)