Projects: ICYSB 2015  International Practical Course in Systems Biology
Institutions: Institute for Experimental Internal Medicine
Disciplines: Modeller
Roles: Not specified
Expertise: Mathematical modelling, Image processing
Tools: Matlab, Copasi, c++, Mathematica
I am a PhD student in the field of Systems Biology. In my PhD project I apply mathematical modelling to understand the role of time delay in biological systems containing delayed negative feedbacks.
Projects: SysMO DB
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester
Disciplines: Modeller
Roles: Not specified
Expertise: Glycolysis, Limit cycle oscillations
Tools: Mathematica, Java
Projects: NoisyStrep
Institutions: University of Cologne
Disciplines: Not specified
Roles: Not specified
Expertise: Statistical Physics, Mathematical modelling
Tools: fortran, stochastic methods, Stochastic models, Mathematica, Matlab, Python
I am a phd student working on statistical physics and complex systems and applying concepts from these fields to biology.
Projects: SUMO
Institutions: University of Amsterdam
Started out in the field of environmental analytical chemistry and after a few years working in that field, switched to process analysis and chemometrics. Next during my PhD work I came into Life Sciences doing data analysis on microbial batch fermentations (Escherichia coli). During my PhD work my main task was to integrate prior knowledge into data analysis, so called grey modeling. Now my focus lies on white models (based on ordinary differential equations), more specifically building a detailed
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Projects: SysMOLAB
Institutions: Wageningen University & Research
Disciplines: Modeller
Roles: Not specified
Expertise: Reactor models, dynamics of biological networks., Mathematical modelling, Bioinformatics
Tools: SQL, Material balance based modeling, Mathematica, Matlab, Copasi, JWS Online, Algebraic equations, Linear equations, ODE, Partial differential equations, SBML, Metabolomics, Model organisms, Cell biology, Computational and theoretical biology, Molecular Biology
I'm a modeller, specialized in kinetic modeling of biochemical networks. My focus in the SysMOLAB consortium is on creating models of Lactococcus lactis glycolysis and couple this to other related lactic acid bacteria like Streptococcus pyogenes and Enterococcus faecalis. Besides kinetic modeling, I'm also interested in combining various modeling techniques (genomescale modeling, qualitative modeling).
Projects: MOSES
Institutions: VU University Amsterdam
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical modelling, Molecular Biology, Biochemistry, Microbiology
Tools: continuous cultivation, Fermentation, Mathematica, Metabolomics, Transcriptomics, Genomics, Biochemistry and protein analysis
Projects: COSMIC, BaCellSysMO
Institutions: University of Rostock
Disciplines: Modeller
Roles: Postdoc
Expertise: Statistical Physics, Data analysis, Systems Biology, bistability, Physics, dynamics of biological networks, dynamics and control of biological networks, Mathematical modelling
Tools: data modelling, Dynamic modelling, Computational Systems Biology, Stochastic models, C programming, differential algebraic equations, Mathematica, Matlab, ODE, Computational and theoretical biology
Modelling of cellular signalling, Dynamic Motifs and Feedback, Quantitative Measures, Theoretical Aspects of Modelling Biological Systems
Projects: COSMIC, BaCellSysMO, SYSTERACT, HUMET Startup, INCOME, BESTER
Institutions: University of Rostock
Disciplines: Not specified
Roles: Not specified
Expertise: Data analysis Mathematical modelling Bioinformatics Systems biology, dynamics of biological networks, dynamics and control of biological networks
Tools: quantitative western blot analysis, Stochastic models, quantitative western blot analyses, differential algebraic equations, stimulus response experiments, Mathematica, Matlab, ODE, Computational and theoretical biology
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical modelling of biosystems and bioprocesses, Statistically and biologically inspired optimization algorithms, dynamics and control of biological networks, parameter estimation, Mathematical modelling
Tools: including:  Dynamic modelling  Parameter estimation  Optimal experimental design  Dynamic optimization, Computational Systems Biology, Mathematica, Matlab, Partial differential equations, ODE, Computational and theoretical biology
We are very interested in applying a systems approach (i.e. modelbased concepts and related computational tools) to problems from the biological domain. In particular, we are doing research in computational systems biology, targetting the following topics:
 Parameter estimation (inverse problems, model calibration) in biochemical pathways
 Optimal experimental design (optimal dynamic experiments) for Systems Biology
 Dynamic optimization (optimal control) of biosystems and bioprocesses

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Projects: KOSMOBAC
Institutions: University of Aberdeen
Disciplines: Not specified
Roles: Not specified
Expertise: Mathematical modelling; Nonlinear Dynamics; Time Series Analysis; network theory
Tools: XPPAUT, data modeling, Mathematica
Projects: SUMO
Institutions: University of Stuttgart
Disciplines: Modeller
Roles: Not specified
Expertise: Systems Biology, parameter estimation, Data Management, Mathematical modelling
Tools: Matlab, Mathematica, SBML, ODE
Former:
PhD student as research associate at the Institute for System Dynamics (ISYS), UniversitĂ¤t Stuttgart, Germany. Engineering backgroundâ†’modelling, identification and analyses. Detailed kinetic modelling, identification and analysis of the TCA cycle (tricarboxylic acid cycle, citric acid cycle) and the ETC (electron transport chains, respiratory chains) of Escherichia coli. One of the SysMODB pals for SUMO.
Now:
Industrial affiliation
Projects: SUMO
Institutions: University of Stuttgart
Disciplines: Modeller
Roles: Postdoc
Expertise: reducedorder modeling, Mathemical Modeling (in particular: ThermodynamicKinetic Modeling), model reduction
Tools: trac (wiki for data management), R, Matlab, Mathematica
I'm interested in the application and development of methods of systems theory in biology (systems biology). In particulary I work on the following topics:
Thermodynamic constraints on biochemical network; Model reduction; Modeling and Analysis of metabolic regulation.
Projects: BaCellSysMO
Institutions: University of Stuttgart
Disciplines: Not specified
Roles: Not specified
Expertise: carbon metabolism, Signalling networks, metabolic networks, Nonlinear Dynamics, Systems Biology, stress responses, Mathematical modelling of biosystems and bioprocesses, Bacillus subtilis, Mathematical modelling, Biochemistry, Microbiology
Tools: fedbatch cultivation, Dynamic modelling, Computational Systems Biology, Deterministic models, continuous cultivation, Enzyme assay, Chromatography, Fermentation, Matlab, Mathematica, ODE, Computational and theoretical biology
I am a biologist in the lab of Prof. Reuss at the University of Stuttgart and I am working in the field of biotechnology and mathematical modelling.
Projects: SysMOLAB
Institutions: University of Heidelberg
Disciplines: Modeller
Roles: Not specified
Expertise: Mathematical modeling, Streptococcus pyogenes, Bioinformatics
Tools: SYCAMORE, SABIORK http://sabio.villabosch.de/, Dynamic modelling, Computational Systems Biology, Matlab, Mathematica, Copasi, JWS Online, SBML, ODE
I am working on a kinetic model of the central metabolism as well as on a genome wide model of Streptococcus pyogenes.