arabidopsis_clock_biopepa - PLM_47
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Model of the arabidopsis circadian clock obtained from the Bio-PEPA model. The model is based on Alexandra Pokhilko's 2010 deterministic model and includes a scaling factor omega to translate from continuous "concentrations" to discrete amounts. Light function is a smooth function switching between 0 and 1, and is parameterised in order to allow to automate experimentation with different light conditions and photoperiods.<br><br><strong>Related Publications</strong><br>Maria Luisa Guerriero, Alexandra Pokhilko, Aurora Piñas Fernández, Karen J. Halliday, Andrew J. Millar, and Jane Hillston (2011). Stochastic properties of the plant circadian clock. J. R. Soc. Interface. Retrieved from: http://rsif.royalsocietypublishing.org/content/early/2011/08/26/rsif.2011.0378.abstract<br><br><strong>Originally submitted to PLaSMo on 2011-09-08 17:35:44</strong>
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Created: 10th Jan 2019 at 16:38
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Projects: PlaSMo model repository
Institutions: University of Edinburgh
SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).
Projects: Millar group, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, TiMet, POP - the Parameter Optimisation Problem, Regulation of flowering time in natural conditions, PlaSMo model repository
Web page: http://www.synthsys.ed.ac.uk
What is PlaSMo? PlaSMo stands for Plant Systems-biology Modelling Ensuring the achievements of yesterday's Mathematical Modellers will be available for the Systems Biologists of tomorrow.
Our aims
To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost
To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...
Programme: SynthSys
Public web page: Not specified
Collection of models submitted to PLaSMo by Maria-Luisa Guerriero and automatically transferred to FAIRDOM Hub.
Submitter: BioData SynthSys
Studies: arabidopsis_clock_biopepa - PLM_47
Model of the arabidopsis circadian clock obtained from the Bio-PEPA model. The model is based on Alexandra Pokhilko's 2010 deterministic model and includes a scaling factor omega to translate from continuous "concentrations" to discrete amounts. Light function is a smooth function switching between 0 and 1, and is parameterised in order to allow to automate experimentation with different light conditions and photoperiods.Related PublicationsMaria Luisa Guerriero, Alexandra Pokhilko, Aurora Piñas ...
Submitter: BioData SynthSys
Biological problem addressed: Gene Regulatory Network
Investigation: Guerriero, Maria-Luisa
Data file for PLaSMo accesssion ID PLM_47, version 1
Creators: BioData SynthSys, Maria-Luisa Guerriero
Submitter: BioData SynthSys
Simplified model file for PLaSMo accession ID PLM_47, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)
Creators: BioData SynthSys, Maria-Luisa Guerriero
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Originally submitted model file for PLaSMo accession ID PLM_47, version 1
Creators: BioData SynthSys, Maria-Luisa Guerriero
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBML
Environment: Not specified
Abstract (Expand)
Authors: A. Pokhilko, A. P. Fernandez, K. D. Edwards, M. M. Southern, K. J. Halliday, A. J. Millar
Date Published: 6th Mar 2012
Publication Type: Not specified
