_A_05_MSA_3cvs-GFFmerged

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Short Name: 05_MSA_3cvs-GFFmerged Assay Class: DRY Assay Type: GFFmerged Title: MSA 3cv and GFF-merged Description: Multiple sequence alignment of Desiree, PW363, Rywal and ITAG/PGSC pISA Assay creation date: 2020-03-10 pISA Assay creator: Maja Zagorscak Phenodata: None Featuredata: Data:

DOI: 10.15490/fairdomhub.1.assay.1270.2

Zenodo URL: None

Created at: 12th Apr 2020 at 09:44

Contents

/input/folderWithIds/test.IDs1

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • test.IDs1

/input/folderWithIds/test.IDs2

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • test.IDs2

/input/my.test.aa.fasta

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • my.test.aa.fasta

/input/path_to_files.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • path_to_files.txt

/scripts/MSA-commands.txt

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • MSA-commands.txt

/scripts/MSA.py

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • MSA.py

/scripts/print.sh

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • print.sh

/reports/SupplementaryFile2.html

Supplementary File 2 - Multiple sequence alignments using ClustalOmega v1.2.1 or MAFFT v7.271 and MView v1.66. Paralogue clusters on representative and alternative sequences, at least one from each of the four genotypes.
Layer _p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • Supplementary File 2.html

/_Assay_METADATA.TXT

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • _Assay_METADATA.TXT

/input/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD

/output/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD

/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD

/scripts/README.MD

_p_stRT/_I_STRT/_S_04_stPanTr/_A_05_MSA_3cvs-GFFmerged

  • README.MD
Fingerprints

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MD5: 0767c20bc2eee60da50c1f4008cc5300

SHA1: f259c78ac533735554e39b40b3a414782e0456ed

Citation
Blejec, A., & Zagorscak, M. (2020). _A_05_MSA_3cvs-GFFmerged. FAIRDOMHub. https://doi.org/10.15490/FAIRDOMHUB.1.ASSAY.1270.2
Snapshots
Snapshot 2 (12th Apr 2020) DOI
Snapshot 1 (25th Mar 2020) DOI
Activity

Views: 716   Downloads: 4

Created: 12th Apr 2020 at 09:44

Last updated: 12th Apr 2020 at 09:44

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