Selected Cell
Cell:
Value:
array design
experiment_sample
data sheet
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
Array design description | |||||||||
FORMAT | |||||||||
ARRAYBATCH | Simon Rasmussen, Henrik Bjørn Nielsen and Hanne Jarmer*. (2009) The transcriptionally active regions in the genome of Bacillus subtilis, Molecular Microbiology, 73, 1043–1057 | The array design specification consists of the description of the common features of the array as the whole, and the description of each array design elements (e.g., each spot). Following terminology used in MAGE, we distinguish between three levels of array design elements: feature - the location on the array, reporter - the nucleotide sequence present in a particular location on the array, and composite sequence - a set of reporters used collectively to measure an expression of a particular gene, exon, or splice-variant. The details that should be given of each of them are described below. | |||||||
ARRAYBATCHNAME | Tiling Array | * array design name | |||||||
ARRAYTYPE | Nimblegen | * platform type: in situ synthesized, spotted or other | |||||||
SPOTPARAMID | BaSysBio Bacillus subtilis T1385K array version 1’ | database ID | |||||||
NUMBERBLOCKSPERCHIP | * physical dimensions of array support (e.g. of slide) | ||||||||
NUMBERBLOCKSHORIZ | 385000 | * number of features on the array | |||||||
NUMBERBLOCKSVERTIC | |||||||||
NUMBERROWSINBLOCK | |||||||||
NUMBERCOLUMNSINBLOCK | date of production | ||||||||
SPOTTINGDATE | |||||||||
COMMENTS | something like surface and coating specification etc | ||||||||
PROVIDERID | Nimblegen | * availability (e.g., for commercial arrays) or production protocol for custom made arrays | |||||||
ARRAY | single array of certain array batch | ||||||||
ARRAYID | |||||||||
SOM03FS0 - SN: 1=37°C_Control - repl. 1 | |||||||||
SOM03FS1 - SN: 2=37°C_Control - repl. 2 | |||||||||
SOM03FS2 - SN: 3=37°C_Control - repl. 3 | |||||||||
SOM03G3X - SN: 22=1.2M NaCl_-SMM - repl. 1 | |||||||||
SOM03G3Y - SN: 23=1.2M NaCl_-SMM - repl. 2 | |||||||||
SOM03G3Z - SN: 24=1.2M NaCl_-SMM - repl. 3 | |||||||||
ARRAYBATCHID | |||||||||
SUPPORTID | |||||||||
COMMENTARE | |||||||||
SLIDE_NB | |||||||||
REPORTER | oligo/sequence on array , related information, common for all arrays in one batch | ||||||||
RPROBEID | database ID | ||||||||
SPOTPARAMID | database ID, foreign key to arraybatch | ||||||||
TYPE | synthetic oligo-nucleotides | * the type of the reporter: synthetic oligo-nucleotides, PCR products, plasmids, colonies, other | |||||||
STRAND | single stranded | * single or double stranded | |||||||
SEQUENCE | |||||||||
LENGHT | Simon Rasmussen, Henrik Bjørn Nielsen and Hanne Jarmer*. (2009) The transcriptionally active regions in the genome of Bacillus subtilis, Molecular Microbiology, 73, 1043–1057 | * approximate lengths if exact sequence not known | |||||||
PROBETYPE | oligo, cDNA etc | ||||||||
ACC NUMBER | * gene name and links to appropriate databases (e.g., SWISS-PROT, or organism specific databases), if known and relevant | ||||||||
PROVIDER | |||||||||
PROVIDERID | o sequence accession number in DDBJ/EMBL/GenBank, if exists | ||||||||
ORGANISM | NCBI Accession number | ||||||||
CHROMOSOMENR | |||||||||
CHROM_BAND | |||||||||
SYMBOL | standartized name of gene | ||||||||
PLASMIDNR | |||||||||
SYMBOL | |||||||||
AMPLIFICATIONPROTOCOLID | database ID, foreign key to amplification protokol (separate) | ||||||||
PURIFICATIONPROTOCOLID | database ID, foreign key to purification protokol (separate) | ||||||||
PRODUCTIONDATE | |||||||||
DNAYIELD | amount of DNA on the spot | ||||||||
A
B
C
D
E
F
G
H
I
J
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
II Experiment description | |||||||||
INSTITUTE | Ernst-Moritz-Arndt-University of Greifswald | ||||||||
INSTITUTEID | http://www.medizin.uni-greifswald.de/funkgenom/institute.html | database ID | |||||||
INSTITUTENAME | Interfaculty Institute for Genetics and Functional Genomics | ||||||||
Project_NAME | BaCell-SysMo | ||||||||
LABNAME | Department of Functional Genomics | ||||||||
NEW- "CONTACT DETAILS" | email: praveen.kumar@uni-greifswald.de Friedrich-Ludwig-Jahn-Straße 15 a 17487 Greifswald, Germany. | ||||||||
whatever you need more | |||||||||
EXPERIMENT | This section that is common to all the hybridizations done in the experiment, such as the goal, brief description, experimental factors tested. It includes the following. | ||||||||
EXPERIMENTID | Continuous growth at 16°Cand Control culture at 37°C | database ID | |||||||
EXPERIMENTNAME | |||||||||
EXP_TYPE | Treatment type | * normal vs. diseased comparison or * treated vs. untreated comparison *time course | |||||||
SUBMITTER | Praveen kumar sappa | ||||||||
EXPLANATION | B. subtilis was grown in SMM at 1.2M NaCl and sample for RNA was harvested at OD1.0 at OD578 nm . Three biological replicates were analysed for Microarray. | Experimental factors, i.e. parameters or conditions tested, for instance, | |||||||
START_DATE | |||||||||
END_DATE | |||||||||
praveen.kumar@uni-greifswald.de | |||||||||
ORGANISM (for sample preparation) | |||||||||
ORGANISMID | database ID | ||||||||
NCBI ID | * organism (NCBI taxonomy) | ||||||||
ORGANISMNAME | Bacillus subtilis (168 trp+) | Ecoli | |||||||
STRAIN | 168 trp+ | o animal/plant strain or line | |||||||
DEVELOPMENTAL_STAGE | o development stage | ||||||||
INVIVOTREATMENT | * in vivo treatments (organism or individual treatments) | ||||||||
GENOTYPE | 168 trp+ | o genetic variation (e.g., gene knockout, transgenic variation) | |||||||
PHENOTYPE | o individual genetic characteristics (e.g., disease alleles, polymorphisms) | ||||||||
SAMPLETREATMENTPROTOCOL (NEW - "STORAGE AND CULTURING PROCEDURES" ) | After harvesting cells rapidly they were centrifuged at 4 °C for 3 min at 8000 rpm. The cell pellets were frozen in liquid nitrogen and stored at -80 °C. | ||||||||
GROW_MEDIUM | SMM | * growth conditions | |||||||
GROW_TEMPERATURE | 37°C | * growth conditions | |||||||
COMMENTS | |||||||||
By a sample we understand the biological material (biomaterial), from which the nucleic acids have been extracted for subsequent labeling and hybridization. In this section all steps that precedes the hybridization with the array are described. We can usually distinguish between the source of the sample (bio-source, e.g., organism, cell type or line), its treatment, the extract preparation, and its labeling. | |||||||||
CELLSOURCE | Biomaterial manipulations: laboratory protocol, including relevant parameters, e.g., | ||||||||
CELLSOURCEID | database ID | ||||||||
PATIENTID | database ID, foreign key to organism | ||||||||
NEW- "Growth stage of culture" | exponentially phase and starvation | ||||||||
NEW - "SAMPLE VOLUME_ML" | 15 OD units corresponding to harvesting time point. | ||||||||
VOLUME_ML | 100 | ||||||||
NUMB_OF_ALIQUOTS | 2 aliquots | ||||||||
SAMPLE_CONDITION | 37°C_Control - repl. 1 | ||||||||
37°C_Control - repl. 2 | |||||||||
37°C_Control - repl. 3 | |||||||||
1.2M NaCl_-SMM - repl. 1 | |||||||||
1.2M NaCl_-SMM - repl. 2 | |||||||||
1.2M NaCl_-SMM - repl. 3 | |||||||||
CELLSOURCEISOLDATE | Praveen kumar Sappa | ||||||||
EXPERIMENTATOR | |||||||||
COMMENT | |||||||||
AGE_AT_SAMPLING | |||||||||
DATEOFSAMPLEPREPARATION | |||||||||
DNA, RNA etc isolation info | |||||||||
NA_ISOLATION | preparation protocol for each extract prepared from the sample | ||||||||
NAISOLATIONID | database ID | ||||||||
CELLSOURCEID | database ID | ||||||||
REFERENCE | extraction of total RNA | ||||||||
TYPE | 2009-02-19T0:0:0+0000 | * whether total RNA, mRNA, or genomic DNA is extracted | |||||||
NAISOLATIONDATE | |||||||||
NAISOLATIONPROTOCOLID | RNA quality was checked with Nanodrop and Bioanalyzer | ||||||||
NAISOLATIONCOMMENT | |||||||||
NAMODIFICATION | DNA SONICATION, DNA-PROTEIN CROSSLINKING, Antibodies used and Immuno-precipitation, DNA ISOLATION | ||||||||
YIELD_UG | |||||||||
CONCENTRATION_UG_PER_ML NEW | Praveen kumar Sappa | ||||||||
EXPERIMENTATOR | samples were treated with Rnase free Dnase I | ||||||||
TREAT_DNASE | |||||||||
CONC_TUB | Absence of DNA was checked with Bioanalyser | ||||||||
CHECK_RESULT | |||||||||
Samples used, extract preparation and labeling | |||||||||
SAMPLE | |||||||||
SAMPLEID | database ID | ||||||||
NAISOLATIONID | database ID | ||||||||
LABELTYPE | * label used (e.g., A-Cy3, G-Cy5, 33P, ..) | 5) External controls added to hybridization extract(s) (spiking controls) | |||||||
NEW - "Labeling of control DNA" | |||||||||
NEW - "Labeling of test DNA" | Hybridization was done at Roche NimbleGen, Inc | ||||||||
LABELINGDATE | |||||||||
LABELINGPROTOCOLID | |||||||||
LABELINGCOMMENT | * label incorporation method | ||||||||
LABELINCORPORATIONRATE | |||||||||
LABELREFERENCEDATE | |||||||||
SPIKEDNAQUANTITY_NG | * element on array expected to hybridize to spiking control | ||||||||
SPIKINGID | * spike type (e.g., oligonucleotide, plasmid DNA, transcript) | ||||||||
MIX_NAID | * spike qualifier (e.g., concentration, expected ratio, labelling methods if different than that of the extract) | ||||||||
HYBRIDISATION | EXPERIMENTID | ||||||||
NEW- "REPLICA OF EXPERIMENT" | Hybridization was done at Roche NimbleGen, Inc | ||||||||
sampleid (mehrere möglich) | Reference is the pool of all the samples. Each sample contributes equal amount of RNA to the pool. | ||||||||
HYBRIDISATIONID | database ID | ||||||||
EXPERIMENTID | database ID | ||||||||
ARRAYID | database ID | ||||||||
HYBPROTID | |||||||||
DATE_OF_HYBRIDISATION | |||||||||
DESCRHYBINSTRUMENTS | |||||||||
HYBPROTOCOL | * quantity of labeled target used | ||||||||
- | * time, concentration, volume, temperature | ||||||||
- | * description of the hybridization instruments | ||||||||
- | * the solution (e.g., concentration of solutes), * wash procedure | ||||||||
- | |||||||||
COMMENTS | |||||||||
Measurement data | We distinguish between three levels of data processing - raw data (images), image quantitations and gene expression data matrix. Each hybridization has at least one image, each image has a corresponding image quantitation table, where a row represents an array design element and a column to a different quantitation types, such as mean or median pixel intensity. Several quantitation tables can be combined using data processing metrics to obtain the 'final' gene expression measurement table associated with the experiment. | ||||||||
* for each scan laboratory protocol for scanning, including scanning hardware and software, scan parameters, including laser power, spatial resolution, pixel space, PMT voltage; | |||||||||
* scanned images; | |||||||||
Image analysis and quantitation | |||||||||
NEW -"RESULTS OF AGILENT FEATURE EXTRACTION (tab delimited txt))" | |||||||||
NEW - "Normalisation method" | |||||||||
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
5201
5202
5203
5204
5205
5206
5207
5208
5209
5210
5211
5212
5213
5214
5215
5216
5217
5218
5219
5220
5221
5222
5223
5224
5225
5226
5227
5228
5229
5230
5231
5232
5233
5234
5235
5236
5237
5238
5239
5240
5241
5242
5243
5244
5245
5246
5247
5248
5249
5250
5251
5252
5253
5254
5255
5256
5257
5258
5259
5260
5261
5262
5263
5264
5265
5266
5267
5268
5269
5270
5271
5272
5273
5274
5275
5276
5277
5278
5279
5280
5281
5282
5283
5284
5285
5286
5287
5288
5289
5290
5291
5292
5293
5294
5295
5296
5297
5298
5299
5300
5301
5302
5303
5304
5305
5306
5307
5308
5309
5310
5311
5312
5313
5314
5315
5316
5317
5318
5319
5320
5321
5322
5323
5324
5325
5326
5327
5328
5329
5330
5331
5332
5333
5334
5335
5336
5337
5338
5339
5340
5341
5342
5343
5344
5345
5346
5347
5348
5349
5350
5351
5352
5353
5354
5355
5356
5357
5358
5359
5360
5361
5362
5363
5364
5365
5366
5367
5368
5369
5370
5371
5372
5373
5374
5375
5376
5377
5378
5379
5380
5381
5382
5383
5384
5385
5386
5387
5388
5389
5390
5391
5392
5393
5394
5395
5396
5397
5398
5399
5400
yrzM | BSU26558 | 9.6481 | 9.454 | 9.5882 | 8.8921 | 8.846 | 8.8534 | ||||||||||||
yrzN | BSU26559 | 9.1408 | 9.0618 | 9.4118 | 7.9928 | 8.202 | 8.093 | ||||||||||||
yrzO | BSU26619 | 7.7774 | 7.8746 | 8.0195 | 10.0043 | 9.7963 | 10.0176 | ||||||||||||
yrzP | BSU27009 | 7.0266 | 7.4305 | 7.4753 | 7.129 | 7.3317 | 7.2298 | ||||||||||||
yrzQ | BSU27468 | 12.0714 | 11.6001 | 11.2185 | 9.3851 | 9.7362 | 9.3569 | ||||||||||||
yrzR | BSU27469 | 12.2125 | 11.5841 | 11.3407 | 9.7638 | 10.012 | 9.4901 | ||||||||||||
yrzS | BSU27729 | 11.944 | 11.6252 | 11.9689 | 12.242 | 11.8608 | 12.2998 | ||||||||||||
yrzT | BSU27809 | 11.1439 | 11.2971 | 11.4505 | 10.3486 | 10.3548 | 10.2221 | ||||||||||||
ysaA | BSU28940 | 12.6872 | 12.5977 | 12.8046 | 12.8404 | 12.8185 | 12.8476 | ||||||||||||
yscB | BSU28890 | 11.4709 | 11.363 | 11.5363 | 8.992 | 8.5227 | 8.8615 | ||||||||||||
ysdA | BSU28840 | 10.4185 | 10.1886 | 10.4809 | 9.6975 | 10.3683 | 10.0939 | ||||||||||||
ysdB | BSU28830 | 12.7552 | 13.1753 | 13.1084 | 13.1858 | 13.0132 | 13.3921 | ||||||||||||
ysdC | BSU28820 | 12.9118 | 12.9455 | 13.1031 | 12.0861 | 11.7797 | 12.0014 | ||||||||||||
ysfB | BSU28670 | 9.1675 | 9.2937 | 9.2685 | 10.0805 | 9.7487 | 9.814 | ||||||||||||
ysfE | BSU28700 | 11.4348 | 11.3025 | 11.3895 | 10.5126 | 10.4879 | 10.6505 | ||||||||||||
ysgA | BSU28650 | 10.9674 | 10.7864 | 10.9655 | 11.7317 | 11.795 | 11.8466 | ||||||||||||
yshA | BSU28610 | 11.4054 | 11.1882 | 11.1231 | 12.1291 | 11.9356 | 12.09 | ||||||||||||
yshB | BSU28600 | 11.0843 | 10.7011 | 11.0748 | 11.907 | 11.7875 | 11.9216 | ||||||||||||
yshE | BSU28570 | 11.1454 | 11.1539 | 11.3199 | 11.749 | 11.5656 | 11.5737 | ||||||||||||
yslB | BSU28460 | 12.2338 | 12.4834 | 12.8043 | 12.6226 | 12.4244 | 12.5639 | ||||||||||||
ysmA | BSU28420 | 11.0786 | 11.0155 | 11.2344 | 11.2064 | 11.0023 | 11.1484 | ||||||||||||
ysmB | BSU28400 | 12.4308 | 12.2264 | 12.2469 | 12.4401 | 12.1683 | 12.3944 | ||||||||||||
ysnA | BSU28360 | 12.5576 | 12.7831 | 12.9462 | 13.6697 | 13.3299 | 13.3955 | ||||||||||||
ysnB | BSU28350 | 12.6911 | 12.94 | 13.1643 | 13.7763 | 13.5345 | 13.6317 | ||||||||||||
ysnD | BSU28320 | 9.9995 | 9.6873 | 9.8125 | 7.6118 | 8.1973 | 7.6604 | ||||||||||||
ysnE | BSU28330 | 8.7897 | 8.6529 | 8.6046 | 8.4952 | 8.4563 | 8.4477 | ||||||||||||
ysnF | BSU28340 | 8.2516 | 8.2071 | 8.306 | 10.1343 | 10.346 | 9.8408 | ||||||||||||
ysoA | BSU28240 | 12.6243 | 12.4739 | 12.3978 | 12.8253 | 12.5622 | 12.7436 | ||||||||||||
ysxB | BSU27950 | 15.7484 | 15.8357 | 15.4786 | 15.6219 | 15.5431 | 15.5364 | ||||||||||||
ysxC | BSU28190 | 12.3734 | 12.4158 | 12.6463 | 12.7862 | 12.6485 | 12.8415 | ||||||||||||
ysxD | BSU28180 | 8.5375 | 8.6631 | 8.8795 | 8.9604 | 9.1357 | 9.0809 | ||||||||||||
ysxE | BSU28100 | 11.4261 | 11.0718 | 10.7214 | 10.5625 | 10.9743 | 10.0954 | ||||||||||||
yszB | BSU27910 | 11.541 | 11.8603 | 11.8514 | 12.2857 | 12.037 | 12.2198 | ||||||||||||
ytaB | BSU30930 | 8.2892 | 8.2639 | 8.1498 | 8.5789 | 8.5627 | 8.3431 | ||||||||||||
ytaF | BSU29070 | 11.5024 | 11.4943 | 11.5634 | 11.847 | 11.6829 | 11.6492 | ||||||||||||
ytaP | BSU30250 | 8.4471 | 8.6501 | 8.7668 | 9.2585 | 9.1469 | 9.2228 | ||||||||||||
ytbD | BSU29040 | 7.1548 | 7.3357 | 7.5129 | 7.3984 | 7.4619 | 7.4999 | ||||||||||||
ytbE | BSU29050 | 7.6062 | 7.8013 | 8.0093 | 7.7318 | 7.8202 | 7.857 | ||||||||||||
ytbQ | BSU30180 | 11.6597 | 11.8322 | 12.0423 | 13.2476 | 13.0962 | 13.0823 | ||||||||||||
ytcA | BSU30860 | 9.4475 | 9.5343 | 10.1934 | 7.4112 | 8.0814 | 7.5292 | ||||||||||||
ytcB | BSU30870 | 9.182 | 9.2854 | 9.6708 | 7.3809 | 7.9208 | 7.48 | ||||||||||||
ytcC | BSU30880 | 9.0128 | 9.0524 | 9.5912 | 7.3401 | 7.8791 | 7.4341 | ||||||||||||
ytcD | BSU29030 | 9.1748 | 9.2418 | 9.0392 | 8.9155 | 8.7052 | 8.6985 | ||||||||||||
ytcI | BSU29560 | 11.3919 | 11.5053 | 11.4612 | 11.3309 | 10.976 | 11.1146 | ||||||||||||
ytcJ | BSU29550 | 11.2743 | 11.4144 | 11.4116 | 11.4212 | 11.1107 | 11.2666 | ||||||||||||
ytcP | BSU30170 | 6.9782 | 7.3858 | 7.5934 | 7.3464 | 7.4753 | 7.4515 | ||||||||||||
ytcQ | BSU30160 | 7.8334 | 8.0381 | 8.1351 | 8.0145 | 7.9521 | 7.9521 | ||||||||||||
ytdA | BSU30850 | 8.4418 | 8.267 | 8.5731 | 7.6419 | 7.9613 | 7.8159 | ||||||||||||
ytdP | BSU30150 | 7.3715 | 7.6994 | 7.9397 | 7.2314 | 7.3527 | 7.3603 | ||||||||||||
yteA | BSU30840 | 9.5885 | 8.7556 | 8.5358 | 7.3048 | 7.7203 | 7.4585 | ||||||||||||
yteJ | BSU29520 | 13.0793 | 13.2061 | 13.6797 | 12.774 | 12.6594 | 12.9146 | ||||||||||||
yteP | BSU30135 | 6.434 | 6.8922 | 7.056 | 6.972 | 7.1788 | 7.0683 | ||||||||||||
yteR | BSU30120 | 6.689 | 7.1344 | 7.2188 | 7.062 | 7.2772 | 7.1545 | ||||||||||||
yteS | BSU30110 | 6.889 | 7.3508 | 7.4455 | 7.302 | 7.4637 | 7.4139 | ||||||||||||
yteT | BSU30100 | 7.3002 | 7.6522 | 7.6128 | 7.6247 | 7.5627 | 7.7645 | ||||||||||||
yteU | BSU30090 | 7.5976 | 7.7292 | 7.8505 | 7.6833 | 7.8246 | 7.7471 | ||||||||||||
yteV | BSU30080 | 8.0972 | 8.1818 | 8.1285 | 8.2325 | 8.592 | 8.1507 | ||||||||||||
ytfI | BSU29510 | 8.4699 | 8.3831 | 8.1747 | 8.3491 | 8.6699 | 8.0584 | ||||||||||||
ytfJ | BSU29500 | 11.439 | 11.0609 | 10.4679 | 10.1432 | 10.2787 | 9.5689 | ||||||||||||
ytfP | BSU30060 | 11.0494 | 11.0625 | 10.9755 | 11.1045 | 10.7618 | 11.0834 | ||||||||||||
ytgP | BSU30050 | 10.8907 | 10.9183 | 11.1884 | 10.3427 | 10.1565 | 10.2809 | ||||||||||||
ythA | BSU30710 | 7.9297 | 7.846 | 7.7268 | 7.343 | 7.6239 | 7.412 | ||||||||||||
ythB | BSU30720 | 8.5141 | 8.4176 | 8.4428 | 7.8004 | 8.0251 | 7.9604 | ||||||||||||
ythP | BSU30010 | 11.7766 | 12.2691 | 12.4251 | 11.3028 | 11.0531 | 11.6178 | ||||||||||||
ythQ | BSU30000 | 11.4904 | 11.7658 | 11.9391 | 11.0606 | 10.8309 | 11.1514 | ||||||||||||
ytiB | BSU30690 | 12.2777 | 12.4076 | 12.5818 | 12.109 | 11.8302 | 11.9097 | ||||||||||||
ytjA | BSU30680 | 9.3455 | 9.3203 | 9.4805 | 10.4157 | 10.6015 | 10.2857 | ||||||||||||
ytjP | BSU29980 | 11.6133 | 11.9375 | 11.9356 | 12.1007 | 11.8737 | 11.9855 | ||||||||||||
ytkA | BSU30660 | 11.3972 | 11.9251 | 12.0895 | 11.2686 | 10.8924 | 11.2031 | ||||||||||||
ytkC | BSU30640 | 7.7788 | 7.5667 | 8.1803 | 7.0944 | 7.3929 | 7.1776 | ||||||||||||
ytkD | BSU30630 | 11.3652 | 11.0236 | 11.2597 | 11.9975 | 11.6619 | 11.7465 | ||||||||||||
ytkK | BSU29420 | 12.3761 | 12.5688 | 12.5326 | 12.0706 | 11.7509 | 11.8168 | ||||||||||||
ytkL | BSU29410 | 11.6005 | 11.8419 | 11.7816 | 11.3953 | 11.2722 | 11.3877 | ||||||||||||
ytkP | BSU29970 | 9.7372 | 9.6737 | 9.7838 | 10.6822 | 10.7864 | 10.7007 | ||||||||||||
ytlA | BSU30595 | 9.8607 | 9.5419 | 9.5614 | 7.4634 | 7.9111 | 7.5125 | ||||||||||||
ytlC | BSU30610 | 9.9747 | 9.7045 | 9.5645 | 7.4888 | 7.8691 | 7.6374 | ||||||||||||
ytlD | BSU30620 | 10.0583 | 9.7088 | 9.5891 | 7.5146 | 7.9648 | 7.4998 | ||||||||||||
ytlI | BSU29400 | 8.542 | 8.3242 | 8.9084 | 9.4414 | 8.9975 | 8.9477 | ||||||||||||
ytlP | BSU29960 | 11.051 | 11.0922 | 11.2347 | 11.8828 | 11.5404 | 11.4536 | ||||||||||||
ytlQ | BSU29950 | 12.303 | 12.1043 | 12.4552 | 11.7641 | 11.4735 | 11.3803 | ||||||||||||
ytlR | BSU29940 | 11.8469 | 11.7291 | 11.9469 | 11.0965 | 10.8468 | 10.8561 | ||||||||||||
ytmA | BSU30580 | 9.3904 | 9.4643 | 9.4951 | 9.3698 | 8.9725 | 9.2324 | ||||||||||||
ytmB | BSU30570 | 10.8339 | 10.5801 | 10.7332 | 11.3975 | 11.1683 | 11.0934 | ||||||||||||
ytmI | BSU29390 | 6.8434 | 7.1015 | 7.3854 | 7.5464 | 7.6161 | 7.4014 | ||||||||||||
ytmO | BSU29330 | 6.9264 | 7.2624 | 7.3574 | 7.6987 | 7.6726 | 7.5083 | ||||||||||||
ytmP | BSU29920 | 12.2383 | 11.7955 | 11.9721 | 12.1374 | 12.0862 | 12.1385 | ||||||||||||
ytnA | BSU30530 | 12.164 | 12.1267 | 12.2825 | 11.6585 | 11.4853 | 11.6079 | ||||||||||||
ytnI | BSU29320 | 7.2152 | 7.574 | 7.5856 | 7.9602 | 7.9041 | 7.8805 | ||||||||||||
ytnJ | BSU29310 | 7.1446 | 7.4328 | 7.5314 | 7.8061 | 7.8137 | 7.6942 | ||||||||||||
ytnL | BSU29290 | 7.2923 | 7.4677 | 7.631 | 7.8261 | 7.8944 | 7.8016 | ||||||||||||
ytnM | BSU29280 | 7.048 | 7.3184 | 7.424 | 7.5867 | 7.7114 | 7.5121 | ||||||||||||
ytnP | BSU29890 | 13.2864 | 13.3634 | 13.3204 | 14.3124 | 14.2153 | 14.2687 | ||||||||||||
ytoA | BSU30520 | 9.7501 | 9.6214 | 9.711 | 11.2347 | 11.0146 | 11.0283 | ||||||||||||
ytoI | BSU29270 | 10.4433 | 10.4352 | 10.4603 | 10.8962 | 10.6647 | 10.8269 | ||||||||||||
ytoP | BSU29860 | 11.4004 | 11.4639 | 11.4657 | 12.4396 | 12.128 | 12.3107 | ||||||||||||
ytoQ | BSU29850 | 11.972 | 12.1227 | 12.0688 | 12.0593 | 11.9292 | 11.9812 | ||||||||||||
ytpA | BSU30510 | 12.1295 | 12.3808 | 12.3115 | 11.9032 | 11.5483 | 11.4962 | ||||||||||||
ytpB | BSU30500 | 11.7115 | 12.0052 | 11.9876 | 11.2691 | 11.2925 | 11.2889 | ||||||||||||
ytpI | BSU29260 | 11.381 | 11.3661 | 11.6247 | 11.6009 | 11.5678 | 11.3427 | ||||||||||||
ytpP | BSU29840 | 12.6593 | 12.7571 | 12.8256 | 13.1194 | 12.7389 | 12.8778 | ||||||||||||
ytpQ | BSU29830 | 12.7143 | 12.8303 | 12.8022 | 13.0816 | 12.8333 | 12.8245 | ||||||||||||
ytpR | BSU29820 | 13.0691 | 13.249 | 13.3994 | 13.394 | 13.1087 | 13.3262 | ||||||||||||
ytpS | BSU29805 | 11.4706 | 11.4795 | 11.4991 | 12.0533 | 11.6884 | 11.8899 | ||||||||||||
ytqA | BSU30480 | 11.0662 | 11.0091 | 10.8624 | 11.5165 | 11.2323 | 11.3412 | ||||||||||||
ytqB | BSU30490 | 10.7013 | 10.6448 | 10.8131 | 11.3567 | 11.0881 | 11.3771 | ||||||||||||
ytrA | BSU30460 | 11.7099 | 11.9543 | 11.4528 | 10.9224 | 10.4715 | 10.9328 | ||||||||||||
ytrB | BSU30450 | 11.948 | 12.3836 | 11.92 | 11.0006 | 10.7409 | 10.9154 | ||||||||||||
ytrC | BSU30440 | 12.0773 | 12.4933 | 12.0471 | 11.1212 | 10.8411 | 11.1028 | ||||||||||||
ytrD | BSU30430 | 11.4484 | 11.8405 | 11.3749 | 10.4907 | 10.2536 | 10.5707 | ||||||||||||
ytrE | BSU30420 | 12.1667 | 12.8168 | 12.2127 | 11.3586 | 10.9544 | 11.3216 | ||||||||||||
ytrF | BSU30410 | 12.8372 | 13.3202 | 12.8836 | 12.0691 | 11.7357 | 11.9129 | ||||||||||||
ytrH | BSU29239 | 7.5798 | 7.8207 | 7.6447 | 8.3259 | 8.4746 | 8.0472 | ||||||||||||
ytrI | BSU29240 | 7.6191 | 7.9059 | 7.6425 | 8.3174 | 8.5646 | 8.0544 | ||||||||||||
ytrP | BSU29650 | 11.1066 | 11.122 | 11.3341 | 11.6445 | 11.4819 | 11.5879 | ||||||||||||
ytsJ | BSU29220 | 13.2567 | 13.4472 | 13.4981 | 13.5351 | 13.3048 | 13.4538 | ||||||||||||
ytsP | BSU29640 | 12.2825 | 12.2244 | 12.5021 | 13.166 | 13.3515 | 13.205 | ||||||||||||
yttA | BSU30360 | 11.9812 | 12.0904 | 12.2504 | 11.2146 | 10.8839 | 11.1884 | ||||||||||||
yttB | BSU30350 | 7.27 | 7.4549 | 7.613 | 8.402 | 8.5747 | 8.6164 | ||||||||||||
yttP | BSU29630 | 9.9432 | 9.9938 | 9.8496 | 11.8461 | 12.2256 | 11.6099 | ||||||||||||
ytvA | BSU30340 | 10.3955 | 10.4489 | 10.7798 | 12.0311 | 12.0205 | 11.9823 | ||||||||||||
ytvB | BSU30330 | 9.4539 | 9.4343 | 9.5857 | 10.211 | 10.3206 | 10.3393 | ||||||||||||
ytvI | BSU29160 | 7.8138 | 7.9734 | 7.6658 | 8.2659 | 8.6956 | 8.0147 | ||||||||||||
ytwF | BSU30310 | 12.2115 | 12.4466 | 12.5572 | 12.6906 | 12.526 | 12.4575 | ||||||||||||
ytwI | BSU29150 | 10.9566 | 10.7742 | 11.0289 | 11.0113 | 10.7077 | 10.7384 | ||||||||||||
ytxB | BSU28970 | 11.2211 | 10.969 | 11.2401 | 11.7185 | 11.6495 | 11.6675 | ||||||||||||
ytxC | BSU28960 | 11.3631 | 11.2513 | 11.0847 | 11.7883 | 11.6522 | 11.5038 | ||||||||||||
ytxD | BSU29730 | 9.5523 | 9.3546 | 9.6557 | 10.1309 | 9.8224 | 9.9998 | ||||||||||||
ytxE | BSU29720 | 9.4752 | 9.4247 | 9.6524 | 10.1183 | 9.8569 | 10.0055 | ||||||||||||
ytxG | BSU29780 | 14.1013 | 14.2102 | 14.1735 | 14.1586 | 13.9152 | 13.9281 | ||||||||||||
ytxH | BSU29770 | 14.3287 | 14.473 | 14.4497 | 14.4351 | 14.3506 | 14.3712 | ||||||||||||
ytxJ | BSU29760 | 13.8585 | 13.9705 | 13.7988 | 13.8898 | 13.8818 | 13.7707 | ||||||||||||
ytxK | BSU29480 | 11.1725 | 11.456 | 11.3243 | 11.0664 | 10.9835 | 11.113 | ||||||||||||
ytxM | BSU30810 | 10.6956 | 10.784 | 10.9568 | 10.913 | 10.6113 | 10.7852 | ||||||||||||
ytxO | BSU30890 | 8.6057 | 8.854 | 9.8225 | 7.6375 | 8.0109 | 7.7348 | ||||||||||||
ytzA | BSU29170 | 12.8776 | 13.0588 | 12.9843 | 13.5607 | 13.5421 | 13.5069 | ||||||||||||
ytzB | BSU29870 | 13.1705 | 13.4029 | 13.3414 | 13.6899 | 13.3128 | 13.3954 | ||||||||||||
ytzC | BSU30470 | 10.1752 | 9.952 | 10.0541 | 8.2316 | 8.7892 | 8.4124 | ||||||||||||
ytzD | BSU29430 | 11.0239 | 10.3257 | 10.4619 | 10.1614 | 10.8377 | 10.2407 | ||||||||||||
ytzE | BSU30020 | 13.4315 | 13.4593 | 13.5734 | 14.3832 | 14.2314 | 14.1893 | ||||||||||||
ytzG | BSU30035 | 9.3239 | 9.4739 | 9.5754 | 8.9024 | 8.8026 | 8.8452 | ||||||||||||
ytzH | BSU29910 | 8.6668 | 8.2509 | 8.0094 | 7.4779 | 8.1755 | 7.7012 | ||||||||||||
ytzI | BSU30659 | 11.0093 | 10.9405 | 11.1032 | 12.0915 | 12.4583 | 12.1624 | ||||||||||||
ytzJ | BSU29249 | 13.1929 | 13.5606 | 13.4949 | 13.5649 | 13.2838 | 13.4094 | ||||||||||||
ytzK | BSU29679 | 14.1537 | 13.7465 | 13.9394 | 15.0283 | 14.791 | 14.8184 | ||||||||||||
ytzL | BSU30739 | 11.7449 | 11.2362 | 11.0943 | 9.2887 | 9.732 | 8.9931 | ||||||||||||
yuaB | BSU31080 | 12.4905 | 12.6317 | 12.3936 | 12.2951 | 12.3795 | 12.7941 | ||||||||||||
yuaC | BSU31070 | 10.8333 | 10.8811 | 10.8388 | 11.4712 | 11.2229 | 11.6159 | ||||||||||||
yuaD | BSU31040 | 10.2429 | 10.3113 | 10.6098 | 11.1647 | 11.0367 | 10.8775 | ||||||||||||
yuaE | BSU31030 | 12.6025 | 13.1327 | 13.0972 | 12.9604 | 12.9343 | 12.6857 | ||||||||||||
yuaF | BSU31020 | 13.3944 | 13.5652 | 13.8248 | 13.2668 | 12.898 | 13.075 | ||||||||||||
yuaG | BSU31010 | 13.7454 | 13.9808 | 14.1567 | 13.849 | 13.3409 | 13.6342 | ||||||||||||
yuaI | BSU31000 | 13.7529 | 13.9995 | 14.4315 | 14.0675 | 13.6012 | 13.798 | ||||||||||||
yubA | BSU31160 | 12.1367 | 12.2815 | 12.5371 | 11.6734 | 11.3892 | 11.5857 | ||||||||||||
yubD | BSU31130 | 9.5064 | 9.5039 | 9.6611 | 9.1951 | 9.1144 | 9.2233 | ||||||||||||
yubF | BSU31110 | 13.2405 | 13.1731 | 13.3913 | 12.4601 | 12.4115 | 12.3522 | ||||||||||||
yueB | BSU31860 | 13.0676 | 13.1301 | 12.9255 | 13.0949 | 12.8372 | 13.2258 | ||||||||||||
yueC | BSU31850 | 12.6329 | 12.8425 | 12.5213 | 13.0563 | 12.8008 | 13.2058 | ||||||||||||
yueD | BSU31840 | 12.0012 | 11.9612 | 11.933 | 12.2997 | 12.3805 | 12.5501 | ||||||||||||
yueE | BSU31830 | 11.3335 | 11.335 | 11.397 | 12.3604 | 12.1021 | 12.026 | ||||||||||||
yueF | BSU31800 | 11.4479 | 11.2341 | 11.4677 | 11.8445 | 11.9522 | 11.809 | ||||||||||||
yueG | BSU31790 | 10.7317 | 10.5355 | 10.7027 | 10.515 | 10.5399 | 10.5258 | ||||||||||||
yueH | BSU31780 | 11.3091 | 11.2243 | 11.309 | 11.0048 | 10.6601 | 10.6676 | ||||||||||||
yueI | BSU31770 | 11.2209 | 11.3841 | 11.4646 | 11.0824 | 10.9127 | 10.9451 | ||||||||||||
yufK | BSU31510 | 10.7307 | 10.699 | 10.859 | 10.7104 | 10.8361 | 10.7705 | ||||||||||||
yufL | BSU31520 | 10.3676 | 10.2481 | 10.3612 | 10.1362 | 9.7127 | 9.927 | ||||||||||||
yufM | BSU31530 | 11.0615 | 11.1912 | 11.3104 | 10.7394 | 10.5606 | 10.6515 | ||||||||||||
yufN | BSU31540 | 11.9767 | 11.9765 | 12.1702 | 11.8271 | 11.5756 | 11.8243 | ||||||||||||
yufO | BSU31550 | 10.8886 | 10.9116 | 11.0038 | 10.528 | 10.2388 | 10.3437 | ||||||||||||
yufP | BSU31560 | 10.6553 | 10.6887 | 10.6509 | 10.2547 | 9.9493 | 10.1152 | ||||||||||||
yufQ | BSU31570 | 10.5615 | 10.4929 | 10.5727 | 10.3254 | 10.1623 | 10.2533 | ||||||||||||
yufS | BSU31590 | 7.4582 | 7.602 | 7.59 | 7.7066 | 7.9591 | 7.6428 | ||||||||||||
yugE | BSU31430 | 9.3413 | 9.4057 | 9.6338 | 9.8396 | 9.7117 | 9.5294 | ||||||||||||
yugF | BSU31420 | 8.2934 | 8.1607 | 8.2268 | 7.4795 | 7.6605 | 7.5423 | ||||||||||||
yugG | BSU31410 | 13.3937 | 13.5846 | 13.6611 | 13.8078 | 13.4396 | 13.5975 | ||||||||||||
yugH | BSU31400 | 12.6778 | 12.6562 | 12.9987 | 13.0015 | 12.7245 | 12.9211 | ||||||||||||
yugI | BSU31390 | 14.2089 | 14.3516 | 14.405 | 14.5669 | 14.3764 | 14.5796 | ||||||||||||
yugJ | BSU31370 | 12.8333 | 13.0675 | 12.9948 | 12.2756 | 11.8553 | 11.9734 | ||||||||||||
yugK | BSU31360 | 9.5161 | 9.7183 | 9.8022 | 10.0036 | 9.8826 | 9.9333 | ||||||||||||
yugM | BSU31340 | 10.2882 | 10.6002 | 10.7243 | 11.2171 | 11.0697 | 11.2009 | ||||||||||||
yugN | BSU31330 | 8.9418 | 9.2434 | 9.5908 | 9.9463 | 9.8064 | 10.0047 | ||||||||||||
yugO | BSU31322 | 7.9599 | 7.8244 | 7.9257 | 8.1029 | 8.1123 | 7.9223 | ||||||||||||
yugP | BSU31310 | 10.9396 | 11.0475 | 11.1062 | 9.9611 | 9.7769 | 9.6988 | ||||||||||||
yugS | BSU31300 | 8.1638 | 8.1552 | 8.1796 | 7.5143 | 7.7709 | 7.5798 | ||||||||||||
yugT | BSU31290 | 9.1405 | 8.9132 | 8.7271 | 8.5523 | 8.679 | 8.3078 | ||||||||||||
yugU | BSU31280 | 10.0627 | 10.1297 | 10.1768 | 9.8835 | 9.7909 | 9.9577 | ||||||||||||
yuiA | BSU32090 | 13.467 | 13.2826 | 13.5915 | 15.4965 | 15.5134 | 15.2332 | ||||||||||||
yuiB | BSU32080 | 13.6457 | 13.7241 | 13.8625 | 15.8919 | 15.9632 | 15.6591 | ||||||||||||
yuiC | BSU32070 | 10.5369 | 10.2853 | 10.3354 | 11.5459 | 11.4752 | 11.1927 | ||||||||||||
yuiD | BSU32060 | 10.7187 | 10.5863 | 10.6802 | 10.8791 | 10.9288 | 10.9812 | ||||||||||||
yuiF | BSU32040 | 11.2267 | 11.1393 | 11.4587 | 10.5974 | 10.517 | 10.8455 | ||||||||||||
yuiH | BSU32020 | 8.7263 | 8.7948 | 8.8692 | 10.151 | 10.0687 | 9.9799 | ||||||||||||
yukB | BSU31875 | 12.4085 | 12.5136 | 12.1483 | 12.5608 | 12.2308 | 12.6516 | ||||||||||||
yukC | BSU31890 | 12.463 | 12.5328 | 12.1166 | 12.5681 | 12.088 | 12.5347 | ||||||||||||
yukD | BSU31900 | 12.5114 | 12.4953 | 11.9364 | 12.7237 | 12.3561 | 12.7132 | ||||||||||||
yukE | BSU31910 | 16.0678 | 16.1989 | 15.965 | 16.3643 | 16.1687 | 16.2146 | ||||||||||||
yukF | BSU31920 | 10.5613 | 10.532 | 10.774 | 10.3106 | 10.0856 | 10.1893 | ||||||||||||
yukJ | BSU31945 | 12.7551 | 12.6941 | 12.6737 | 13.3829 | 13.072 | 13.0943 | ||||||||||||
yulB | BSU31210 | 9.6317 | 9.8214 | 9.8514 | 10.2644 | 9.9725 | 10.2197 | ||||||||||||
yulC | BSU31200 | 9.4141 | 9.5208 | 9.6772 | 9.7526 | 9.5865 | 9.6004 | ||||||||||||
yulD | BSU31190 | 8.3779 | 8.6989 | 8.8945 | 8.7873 | 8.6945 | 8.587 |