Selected Cell
Cell:
Value:
6h results genes
12h results genes
24h results genes
DAVID 6h
DAVID 12h
DAVID 24h
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Supplementary Table S2. List of down and upregulated genes comparing P. putida KT2440 cultures in solid vs liquid media at 6 hours of incubation. | |||||||||
PP number | DAVID accession number | Symbol | Product | FoldChange | p.adj.Value | ||||
PP_0008 | 1043484 | rnpA | ribonuclease P protein component | 4.96 | 0.00000815 | ||||
PP_0009 | 1043485 | rpmH | 50S ribosomal protein L34 | 6.66 | 0.00000927 | ||||
PP_0023 | 1043502 | NP_742193.1 | hypothetical protein | 2.23 | 0.00048457 | ||||
PP_0068 | 1043549 | def-I | peptide deformylase | 4.73 | 0.00000000 | ||||
PP_0089 | 1043570 | osmC | stress-induced peroxiredoxin | 4.11 | 0.00000014 | ||||
PP_0115 | 1043606 | katE | hydroperoxidase | 3.21 | 0.00008868 | ||||
PP_0135 | 1043635 | NP_742305.1 | hypothetical protein | 7.62 | 0.00000035 | ||||
PP_0136 | 1043636 | NP_742306.1 | hypothetical protein | 3.41 | 0.00092760 | ||||
PP_0157 | 1043670 | gcdR | gcdH transcriptional regulator | 2.54 | 0.00021027 | ||||
PP_0161 | 1043684 | NP_742330.1 | putative transmembrane sensor | -23.00 | 0.00000000 | ||||
PP_0162 | 1043685 | NP_742331.1 | ECF family RNA polymerase sigma-70 factor | -13.42 | 0.00000000 | ||||
PP_0180 | 1043706 | NP_742349.1 | cytochrome c family protein | -2.92 | 0.00020427 | ||||
PP_0213 | 1043755 | gabD-I | succinate-semialdehyde dehydrogenase | -2.23 | 0.00002239 | ||||
PP_0214 | 1043757 | gabT | 5-aminovalerate aminotransferase DavT | -2.09 | 0.00075493 | ||||
PP_0235 | 1043789 | NP_742403.1 | peroxidase | 4.03 | 0.00000000 | ||||
PP_0236 | 1043798 | ssuE | NAD(P)H-dependent FMN reductase subunit | 4.28 | 0.00018864 | ||||
PP_0270 | 1043866 | NP_742437.1 | sensor histidine kinase | -8.20 | 0.00000000 | ||||
PP_0271 | 1043867 | gltR-I | two-component system response regulator | -9.78 | 0.00000000 | ||||
PP_0339 | 1044044 | aceE | pyruvate dehydrogenase E1 component | 2.71 | 0.00000075 | ||||
PP_0350 | 1044057 | NP_742517.1 | ferrichrome-iron receptor | -4.05 | 0.00026270 | ||||
PP_0351 | 1044058 | NP_742518.1 | transmembrane sensor | -14.36 | 0.00000000 | ||||
PP_0352 | 1044059 | NP_742519.1 | ECF family RNA polymerase sigma-70 factor | -12.51 | 0.00000000 | ||||
PP_0369 | 1044078 | NP_742536.2 | diguanylate cyclase | -4.18 | 0.00003866 | ||||
PP_0389 | 1044101 | rpsU | 30S ribosomal protein S21 | 4.44 | 0.00000228 | ||||
PP_0404 | 1044119 | lptD | LPS-assembly protein LptD | 2.66 | 0.00003415 | ||||
PP_0415 | 1044137 | rpe | ribulose-5-phosphate 3-epimerase | 3.02 | 0.00003245 | ||||
PP_0418 | 1044141 | estP | esterase EstP | 2.16 | 0.00053502 | ||||
PP_0440 | 1044182 | tufA | elongation factor Tu-A | 3.67 | 0.00000061 | ||||
PP_0441 | 1044184 | secE | protein translocase subunit SecE | 3.02 | 0.00001712 | ||||
PP_0445 | 1044188 | rplJ | 50S ribosomal protein L10 | 2.75 | 0.00000183 | ||||
PP_0446 | 1044189 | rplL | 50S ribosomal protein L7/L12 | 2.20 | 0.00006480 | ||||
PP_0449 | 1044192 | rpsL | 30S ribosomal protein S12 | 3.50 | 0.00000003 | ||||
PP_0450 | 1044193 | rpsG | 30S ribosomal protein S7 | 2.41 | 0.00015258 | ||||
PP_0451 | 1044195 | fusA | elongation factor G 1 | 2.63 | 0.00000036 | ||||
PP_0452 | 1044196 | tufB | elongation factor Tu-B | 2.72 | 0.00000017 | ||||
PP_0453 | 1044199 | rpsJ | 30S ribosomal protein S10 | 5.40 | 0.00000000 | ||||
PP_0454 | 1044200 | rplC | 50S ribosomal protein L3 | 4.33 | 0.00000998 | ||||
PP_0455 | 1044201 | rplD | 50S ribosomal protein L4 | 2.89 | 0.00025272 | ||||
PP_0456 | 1044202 | rplW | 50S ribosomal protein L23 | 2.79 | 0.00055586 | ||||
PP_0458 | 1044204 | rpsS | 30S ribosomal protein S19 | 2.27 | 0.00022455 | ||||
PP_0459 | 1044206 | rplV | 50S ribosomal protein L22 | 2.37 | 0.00004627 | ||||
PP_0460 | 1044209 | rpsC | 30S ribosomal protein S3 | 2.42 | 0.00023044 | ||||
PP_0461 | 1044210 | rplP | 50S ribosomal protein L16 | 2.16 | 0.00059235 | ||||
PP_0468 | 1044227 | rpsH | 30S ribosomal protein S8 | 3.53 | 0.00000025 | ||||
PP_0469 | 1044228 | rplF | 50S ribosomal protein L6 | 2.69 | 0.00003449 | ||||
PP_0476 | 1044241 | rpsM | 30S ribosomal protein S13 | 3.15 | 0.00001644 | ||||
PP_0477 | 1044242 | rpsK | 30S ribosomal protein S11 | 2.27 | 0.00043908 | ||||
PP_0478 | 1044244 | rpsD | 30S ribosomal protein S4 | 2.25 | 0.00033652 | ||||
PP_0481 | 1044248 | katA | catalase | 45.36 | 0.00000000 | ||||
PP_0482 | 1044249 | bfr-I | bacterioferritin | 4.56 | 0.00000000 | ||||
PP_0486 | 1044256 | NP_742652.1 | GntR family transcriptional regulator | 4.88 | 0.00000002 | ||||
PP_0513 | 1044288 | nrdR | DNA-binding transcriptional repressor NrdR | 4.90 | 0.00023149 | ||||
PP_0516 | 1044291 | ribAB-I | bifunctional 3%2C4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II | 2.70 | 0.00000754 | ||||
PP_0538 | 1044317 | ppa | inorganic pyrophosphatase | 2.61 | 0.00001116 | ||||
PP_0552 | 1044336 | bdhA | 2%2C3-butanediol dehydrogenase | 5.09 | 0.00000000 | ||||
PP_0553 | 1044339 | acoC | acetoin cleaving system dihydrolipoyllysine-residue acetyltransferase | 5.35 | 0.00000000 | ||||
PP_0554 | 1044340 | acoB | acetoin:2%2C6-dichlorophenolindophenol oxidoreductase subunit beta | 5.20 | 0.00000000 | ||||
PP_0555 | 1044342 | acoA | acetoin:2%2C6-dichlorophenolindophenol oxidoreductase subunit alpha | 4.86 | 0.00000000 | ||||
PP_0556 | 1044343 | NP_742719.1 | acetoin catabolism protein | 2.42 | 0.00011583 | ||||
PP_0558 | 1044345 | accC | acetyl-CoA carboxylase biotin carboxylase subunit | 2.35 | 0.00023044 | ||||
PP_0559 | 1044346 | accB | acetyl-CoA carboxylase biotin carboxyl carrier subunit | 4.00 | 0.00000000 | ||||
PP_0560 | 1044348 | aroQ-I | type II 3-dehydroquinate dehydratase | 4.05 | 0.00000008 | ||||
PP_0563 | 1044352 | NP_742726.1 | two-component system response regulator | -3.18 | 0.00000004 | ||||
PP_0570 | 1044360 | yfhM | lipoprotein | 2.97 | 0.00000037 | ||||
PP_0600 | 1044414 | rpsT | 30S ribosomal protein S20 | 6.70 | 0.00002500 | ||||
PP_0622 | 1044439 | bamD | outer membrane protein assembly factor BamD | 3.11 | 0.00033190 | ||||
PP_0654 | 1044477 | mdh | malate dehydrogenase | -2.08 | 0.00038357 | ||||
PP_0657 | 1044481 | NP_742818.1 | amino acid ABC transporter substrate-binding protein | 3.47 | 0.00037589 | ||||
PP_0667 | 1044491 | NP_742828.1 | ECF family RNA polymerase sigma-70 factor | -10.98 | 0.00000000 | ||||
PP_0668 | 1044492 | NP_742829.1 | transmembrane sensor | -20.06 | 0.00000000 | ||||
PP_0674 | 1044500 | ettA | ADP/ATP ratio sensor/translation inhibitor | 3.43 | 0.00004606 | ||||
PP_0685 | 1044511 | NP_742846.1 | hypothetical protein | -40.66 | 0.00000000 | ||||
PP_0688 | 1044516 | rplU | 50S ribosomal protein L21 | 7.67 | 0.00000000 | ||||
PP_0689 | 1044517 | rpmA | 50S ribosomal protein L27 | 4.12 | 0.00000805 | ||||
PP_0700 | 1044530 | NP_742861.1 | transmembrane sensor | -14.06 | 0.00000000 | ||||
PP_0703 | 1044534 | NP_742864.1 | transmembrane sensor | -15.24 | 0.00000000 | ||||
PP_0704 | 1044535 | NP_742865.1 | ECF family RNA polymerase sigma-70 factor | -6.02 | 0.00000000 | ||||
PP_0711 | 1044542 | ycaC-I | putative hydrolase | 3.59 | 0.00000000 | ||||
PP_0723 | 1044555 | ispE | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase | 5.81 | 0.00000000 | ||||
PP_0732 | 1044565 | hemA | glutamyl-tRNA reductase | 3.11 | 0.00000591 | ||||
PP_0737 | 1044570 | pagL-I | lipid A 3-O-deacylase | 2.24 | 0.00022052 | ||||
PP_0786 | 1044626 | trxB | thioredoxin reductase | 24.22 | 0.00000000 | ||||
PP_0812 | 1044661 | cyoA | cytochrome bo terminal oxidase subunit II | 6.62 | 0.00000000 | ||||
PP_0817 | 1044669 | alaC | aminotransferase | 4.60 | 0.00000003 | ||||
PP_0832 | 1044690 | queA | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | 3.61 | 0.00022671 | ||||
PP_0838 | 1044698 | suhB | bifunctional inositol monophosphatase/glycerol-2-phosphatase | 4.99 | 0.00000000 | ||||
PP_0843 | 1044705 | iscU | iron-sulfur cluster assembly scaffold protein | -2.05 | 0.00082511 | ||||
PP_0846 | 1044710 | hscA | DnaK-like molecular chaperone | -2.18 | 0.00012767 | ||||
PP_0861 | 1044732 | NP_743022.2 | outer membrane ferric siderophore receptor | -3.37 | 0.00078766 | ||||
PP_0863 | 1044737 | NP_743024.1 | hypothetical protein | -2.99 | 0.00001742 | ||||
PP_0864 | 1044738 | speC | ornithine decarboxylase | 3.88 | 0.00018864 | ||||
PP_0883 | 1044767 | opdP | glycine-glutamate dipeptide porin | 2.89 | 0.00000274 | ||||
PP_0897 | 1044785 | NP_743058.1 | class 1 fumarate hydratase | 5.28 | 0.00000000 | ||||
PP_0913 | 1044812 | NP_743074.1 | hypothetical protein | -5.88 | 0.00000000 | ||||
PP_0915 | 1044816 | sodB | superoxide dismutase | 7.67 | 0.00000000 | ||||
PP_0932 | 1044838 | gatC | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C | 3.19 | 0.00000185 | ||||
PP_0933 | 1044840 | mreB | cell wall structural actin-like protein MreB | 3.03 | 0.00027088 | ||||
PP_0943 | 1044854 | NP_743104.1 | hypothetical protein | -88.09 | 0.00000000 |
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Supplementary Table S3. List of down and upregulated genes comparing P. putida KT2440 cultures in solid vs liquid media at 12 hours of incubation. | |||||||||
PP number | DAVID accession number | Symbol | Product | FoldChange | p.adj.Value | ||||
PP_0008 | 1043484 | rnpA | ribonuclease P protein component | 11.45 | 0.0000001 | ||||
PP_0009 | 1043485 | rpmH | 50S ribosomal protein L34 | 12.05 | 0.0000041 | ||||
PP_0061 | 1043542 | glyQ | glycine-tRNA ligase subunit alpha | 4.34 | 0.0008186 | ||||
PP_0068 | 1043549 | def-I | peptide deformylase | 11.51 | 0.0000000 | ||||
PP_0085 | 1043566 | NP_742255.1 | hypothetical protein | 3.77 | 0.0000249 | ||||
PP_0089 | 1043570 | osmC | stress-induced peroxiredoxin | 5.26 | 0.0001948 | ||||
PP_0114 | 1043605 | metN | methionine ABC transporter ATP-binding protein | 6.48 | 0.0000013 | ||||
PP_0154 | 1043665 | scpC | propionyl-CoA:succinate CoA transferase | 16.44 | 0.0000001 | ||||
PP_0161 | 1043684 | NP_742330.1 | putative transmembrane sensor | -8.59 | 0.0000002 | ||||
PP_0162 | 1043685 | NP_742331.1 | ECF family RNA polymerase sigma-70 factor | -8.27 | 0.0000003 | ||||
PP_0168 | 1043692 | NP_742337.1 | putative surface adhesion protein | -5.01 | 0.0000009 | ||||
PP_0202 | 1043730 | NP_742371.1 | CBS domain-containing protein | 4.84 | 0.0000020 | ||||
PP_0204 | 1043733 | NP_742373.1 | GntR family transcriptional regulator | 8.67 | 0.0000002 | ||||
PP_0224 | 1043769 | NP_742392.1 | DszC family monooxygenase | 21.91 | 0.0000000 | ||||
PP_0233 | 1043786 | tauA | taurine ABC transporter substrate-binding protein | 12.16 | 0.0000000 | ||||
PP_0234 | 1043787 | oprE | outer-membrane porin E | 5.19 | 0.0003797 | ||||
PP_0235 | 1043789 | NP_742403.1 | peroxidase | 18.76 | 0.0000000 | ||||
PP_0236 | 1043798 | ssuE | NAD(P)H-dependent FMN reductase subunit | 77.73 | 0.0000000 | ||||
PP_0354 | 1044061 | NP_742521.1 | CBS domain-containing protein | 27.81 | 0.0000000 | ||||
PP_0389 | 1044101 | rpsU | 30S ribosomal protein S21 | 11.07 | 0.0000000 | ||||
PP_0425 | 1044153 | yhfA | hypothetical protein | 3.54 | 0.0008840 | ||||
PP_0440 | 1044182 | tufA | elongation factor Tu-A | 3.73 | 0.0000746 | ||||
PP_0441 | 1044184 | secE | protein translocase subunit SecE | 5.01 | 0.0000001 | ||||
PP_0453 | 1044199 | rpsJ | 30S ribosomal protein S10 | 9.18 | 0.0000000 | ||||
PP_0454 | 1044200 | rplC | 50S ribosomal protein L3 | 4.27 | 0.0002904 | ||||
PP_0468 | 1044227 | rpsH | 30S ribosomal protein S8 | 6.02 | 0.0000000 | ||||
PP_0469 | 1044228 | rplF | 50S ribosomal protein L6 | 3.89 | 0.0000802 | ||||
PP_0481 | 1044248 | katA | catalase | 253.01 | 0.0000000 | ||||
PP_0513 | 1044288 | nrdR | DNA-binding transcriptional repressor NrdR | 6.92 | 0.0007793 | ||||
PP_0538 | 1044317 | ppa | inorganic pyrophosphatase | 5.67 | 0.0000001 | ||||
PP_0553 | 1044339 | acoC | acetoin cleaving system dihydrolipoyllysine-residue acetyltransferase | 4.43 | 0.0006099 | ||||
PP_0554 | 1044340 | acoB | acetoin:2%2C6-dichlorophenolindophenol oxidoreductase subunit beta | 5.66 | 0.0001708 | ||||
PP_0555 | 1044342 | acoA | acetoin:2%2C6-dichlorophenolindophenol oxidoreductase subunit alpha | 5.10 | 0.0002365 | ||||
PP_0556 | 1044343 | NP_742719.1 | acetoin catabolism protein | 9.33 | 0.0000072 | ||||
PP_0560 | 1044348 | aroQ-I | type II 3-dehydroquinate dehydratase | 5.99 | 0.0000001 | ||||
PP_0600 | 1044414 | rpsT | 30S ribosomal protein S20 | 17.64 | 0.0000000 | ||||
PP_0622 | 1044439 | bamD | outer membrane protein assembly factor BamD | 7.10 | 0.0000102 | ||||
PP_0657 | 1044481 | NP_742818.1 | amino acid ABC transporter substrate-binding protein | 14.18 | 0.0000000 | ||||
PP_0685 | 1044511 | NP_742846.1 | hypothetical protein | -11.97 | 0.0000000 | ||||
PP_0686 | 1044512 | yjdM | Zn-ribbon domain-containing protein | 5.21 | 0.0001873 | ||||
PP_0688 | 1044516 | rplU | 50S ribosomal protein L21 | 10.18 | 0.0000000 | ||||
PP_0689 | 1044517 | rpmA | 50S ribosomal protein L27 | 4.70 | 0.0000119 | ||||
PP_0700 | 1044530 | NP_742861.1 | transmembrane sensor | -5.37 | 0.0000077 | ||||
PP_0723 | 1044555 | ispE | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase | 8.60 | 0.0000000 | ||||
PP_0732 | 1044565 | hemA | glutamyl-tRNA reductase | 8.58 | 0.0000000 | ||||
PP_0755 | 1044591 | NP_742916.1 | hypothetical protein | 7.57 | 0.0000300 | ||||
PP_0765 | 1044601 | NP_742926.1 | hypothetical protein | -3.94 | 0.0000337 | ||||
PP_0786 | 1044626 | trxB | thioredoxin reductase | 75.18 | 0.0000000 | ||||
PP_0812 | 1044661 | cyoA | cytochrome bo terminal oxidase subunit II | 14.43 | 0.0000000 | ||||
PP_0838 | 1044698 | suhB | bifunctional inositol monophosphatase/glycerol-2-phosphatase | 6.01 | 0.0000001 | ||||
PP_0903 | 1044794 | NP_743064.1 | hypothetical protein | 4.17 | 0.0003324 | ||||
PP_0913 | 1044812 | NP_743074.1 | hypothetical protein | -3.89 | 0.0001131 | ||||
PP_0915 | 1044816 | sodB | superoxide dismutase | 3.87 | 0.0000259 | ||||
PP_0932 | 1044838 | gatC | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C | 5.50 | 0.0000094 | ||||
PP_0941 | 1044851 | NP_743102.1 | ribosome associated protein | 4.69 | 0.0000742 | ||||
PP_0943 | 1044854 | NP_743104.1 | hypothetical protein | -5.16 | 0.0005890 | ||||
PP_0944 | 1044855 | fumC-I | class 2 fumarate hydratase | -13.15 | 0.0000001 | ||||
PP_0945 | 1044858 | NP_743106.1 | hypothetical protein | -28.87 | 0.0000000 | ||||
PP_0946 | 1044859 | sodA | superoxide dismutase | -10.26 | 0.0001087 | ||||
PP_0993 | 1044920 | NP_743154.1 | hypothetical protein | -3.94 | 0.0001320 | ||||
PP_1031 | 1044148 | guaB | IMP dehydrogenase and single strand DNA binding factor | 4.79 | 0.0000006 | ||||
PP_1037 | 1044327 | purL | phosphoribosylformylglycinamidine synthase | 3.62 | 0.0001805 | ||||
PP_1082 | 1045026 | bfr-II | bacterioferritin | 4.26 | 0.0000262 | ||||
PP_1084 | 1045103 | tsaA | peroxiredoxin | 4.39 | 0.0000128 | ||||
PP_1100 | 1045219 | dcd | deoxycytidine triphosphate deaminase | 3.42 | 0.0009570 | ||||
PP_1111 | 1045223 | NP_743272.1 | synthetase | -4.60 | 0.0000048 | ||||
PP_1112 | 1045233 | NP_743273.1 | membrane protein | -4.16 | 0.0007806 | ||||
PP_1125 | 1045260 | NP_743286.1 | putative Helicase | 5.03 | 0.0001041 | ||||
PP_1127 | 1045267 | estC | carboxylesterase | 5.36 | 0.0002039 | ||||
PP_1144 | 1045464 | NP_743305.1 | membrane protein | -5.54 | 0.0000015 | ||||
PP_1162 | 1045699 | gstA | glutathione S-transferase GstA | 9.40 | 0.0000000 | ||||
PP_1212 | 1045969 | NP_743372.1 | hypothetical protein | 10.93 | 0.0000000 | ||||
PP_1237 | 1046257 | dapA-I | 4-hydroxy-tetrahydrodipicolinate synthase | 7.65 | 0.0000001 | ||||
PP_1289 | 1043300 | NP_743449.1 | DUF328 domain-containing protein | 47.35 | 0.0000000 | ||||
PP_1303 | 1041607 | cysD | sulfate adenylyltransferase subunit 2 | 25.22 | 0.0000000 | ||||
PP_1312 | 1041626 | zapE | nucleoside triphosphate hydrolase domain-containing protein | 9.19 | 0.0000000 | ||||
PP_1315 | 1043891 | rplM | 50S ribosomal protein L13 | 6.41 | 0.0000000 | ||||
PP_1373 | 1041750 | pitB | phosphate transporter | 9.22 | 0.0000000 | ||||
PP_1424 | 1045860 | NP_743582.1 | DUF339 domain-containing protein | 5.33 | 0.0005890 | ||||
PP_1431 | 1045850 | lepA | elongation factor 4 | 3.24 | 0.0005081 | ||||
PP_1460 | 1045782 | NP_743618.1 | membrane protein | 5.18 | 0.0001371 | ||||
PP_1462 | 1045775 | rpsP | 30S ribosomal protein S16 | 6.44 | 0.0000001 | ||||
PP_1495 | 1045671 | prfB | peptide chain release factor 2 | 4.90 | 0.0001015 | ||||
PP_1506 | 1045513 | adk | adenylate kinase | 13.09 | 0.0000000 | ||||
PP_1607 | 1044925 | accA | acetyl-CoA carboxylase carboxyltransferase subunit alpha | 4.72 | 0.0000014 | ||||
PP_1616 | 1044879 | frmA | glutathione-dependent formaldehyde dehydrogenase | 4.22 | 0.0000102 | ||||
PP_1625 | 1044839 | fdxA | ferredoxin 1 | 10.33 | 0.0000037 | ||||
PP_1638 | 1044791 | fpr-I | ferredoxin--NADP(+) reductase | 6.70 | 0.0000005 | ||||
PP_1651 | 1044421 | NP_743808.2 | two-component system response regulator | -12.15 | 0.0000002 | ||||
PP_1652 | 1044394 | pfeS-II | histidine kinase | -5.79 | 0.0000228 | ||||
PP_1660 | 1044314 | NP_743817.1 | hypothetical protein | -3.93 | 0.0002427 | ||||
PP_1665 | 1044224 | purM | phosphoribosylformylglycinamidine cyclo-ligase | 5.51 | 0.0000789 | ||||
PP_1691 | 1043737 | NP_743848.1 | hypothetical protein | 5.98 | 0.0000655 | ||||
PP_1702 | 1043631 | rdgC | recombination-associated protein RdgC | 4.76 | 0.0003045 | ||||
PP_1714 | 1043498 | fklB-II | FKBP-type peptidyl-prolyl cis-trans isomerase | 7.34 | 0.0000000 | ||||
PP_1742 | 1043433 | yjcH | inner membrane protein | 14.17 | 0.0000000 | ||||
PP_1743 | 1043431 | actP-I | acetate permease | 7.12 | 0.0000744 | ||||
PP_1795 | 1043308 | NP_743951.1 | hypothetical protein | 5.01 | 0.0000033 |
A
B
C
D
E
F
G
H
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701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
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749
750
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782
PP_5399 | 1041619 | NP_747499.1 | hypothetical protein | -3.00 | 0.00000615 | ||||
PP_5401 | 1042035 | NP_747501.1 | hypothetical protein | -2.43 | 0.00036955 | ||||
PP_5410 | 1042019 | NP_747510.1 | DeoR family transcriptional regulator | 5.58 | 0.00000001 | ||||
PP_5411 | 1045333 | glmU | bifunctional N-acetyl glucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyl transferase | 2.85 | 0.00023039 | ||||
PP_5417 | 1046071 | atpF | ATP synthase subunit b | 2.71 | 0.00088447 | ||||
PP_5419 | 1045265 | atpB | ATP synthase subunit a | 6.76 | 0.00000000 | ||||
PP_5420 | 1042004 | atpI | ATP synthase protein I | 11.35 | 0.00000000 | ||||
PP_5426 | 26969696 | YP_009236891.1 | hypothetical protein | 3.97 | 0.00000197 | ||||
PP_5427 | 26969697 | YP_009236892.1 | hypothetical protein | -4.79 | 0.00000001 | ||||
PP_5433 | 26969705 | YP_009236900.1 | hypothetical protein | -2.81 | 0.00001123 | ||||
PP_5441 | 26969715 | YP_009236906.1 | hypothetical protein | -3.90 | 0.00000000 | ||||
PP_5477 | 26969776 | YP_009236951.1 | hypothetical protein | 10.02 | 0.00000000 | ||||
PP_5524 | 26969828 | YP_009236999.1 | hypothetical protein | 36.43 | 0.00000000 | ||||
PP_5542 | 26969849 | YP_009237017.1 | hypothetical protein | 5.32 | 0.00079230 | ||||
PP_5559 | 26969867 | YP_009237033.1 | hypothetical protein | 3.07 | 0.00014911 | ||||
PP_5560 | 26969868 | YP_009237034.1 | hypothetical protein | 4.38 | 0.00000001 | ||||
PP_5562 | 26969870 | YP_009237036.1 | hypothetical protein | 5.09 | 0.00000000 | ||||
PP_5567 | 26969874 | YP_009237040.1 | hypothetical protein | 16.06 | 0.00000000 | ||||
PP_5592 | 26969897 | YP_009237061.1 | hypothetical protein | 6.19 | 0.00000000 | ||||
PP_5593 | 26969898 | YP_009237062.1 | hypothetical protein | 7.51 | 0.00000000 | ||||
PP_5594 | 26969899 | YP_009237063.1 | hypothetical protein | 9.28 | 0.00000000 | ||||
PP_5596 | 26969901 | YP_009237065.1 | hypothetical protein | 4.05 | 0.00000009 | ||||
PP_5597 | 26969902 | YP_009237066.1 | hypothetical protein | 3.13 | 0.00009248 | ||||
PP_5600 | 26969905 | YP_009237069.1 | hypothetical protein | 12.13 | 0.00003014 | ||||
PP_5602 | 26969910 | peaA | quinohemoprotein amine dehydrogenase subunit alpha | -3.37 | 0.00009849 | ||||
PP_5614 | 26969924 | YP_009237087.1 | hypothetical protein | 5.32 | 0.00000000 | ||||
PP_5626 | 26969936 | YP_009237099.1 | repressor-like DNA-binding domain-containing protein | 3.85 | 0.00016873 | ||||
PP_5644 | 26969953 | YP_009237117.1 | membrane protein | -2.81 | 0.00034540 | ||||
PP_5659 | 26969967 | YP_009237130.1 | hypothetical protein | 3.85 | 0.00001599 | ||||
PP_5660 | 26969968 | kdpF | potassium-transporting ATPase subunit F | -12.06 | 0.00000000 | ||||
PP_5694 | 26970007 | YP_009237167.1 | hypothetical protein | 2.57 | 0.00019291 | ||||
PP_5698 | 26970012 | YP_009237171.1 | hypothetical protein | 4.21 | 0.00025431 | ||||
PP_5699 | 26970013 | YP_009237172.1 | iron uptake protein | 5.89 | 0.00075129 | ||||
PP_5710 | 26970031 | YP_009237184.1 | hypothetical protein | -3.26 | 0.00006237 | ||||
PP_5723 | 26970051 | YP_009237199.1 | hypothetical protein | 13.56 | 0.00000000 | ||||
PP_5737 | 26970065 | YP_009237211.1 | hypothetical protein | -2.86 | 0.00000288 | ||||
PP_5738 | 26970066 | YP_009237212.1 | hypothetical protein | -2.60 | 0.00007654 | ||||
PP_5740 | 26970068 | YP_009237214.1 | hypothetical protein | -2.82 | 0.00019291 | ||||
NoSymbol | t44 ncRNA | 3.80 | 0.00000525 | ||||||
NoSymbol | PrrB_RsmZ ncRNA | -3.79 | 0.00000372 | ||||||
NoSymbol | gyrA regulatory region | 4.05 | 0.00000040 | ||||||
aprDB | --- | 2.65 | 0.00015791 | ||||||
NoSymbol | tRNA-Ser | 8.15 | 0.00021466 | ||||||
NoSymbol | tRNA-Glu | 6.21 | 0.00000007 | ||||||
NoSymbol | tRNA-Gly | 9.70 | 0.00000000 | ||||||
NoSymbol | tRNA-Glu | 13.15 | 0.00000000 | ||||||
NoSymbol | tRNA-Gly | 9.19 | 0.00000000 | ||||||
NoSymbol | rne-II regulatory region | 4.75 | 0.00022293 | ||||||
tmk | --- | -2.29 | 0.00025660 | ||||||
NoSymbol | P16 ncRNA | -3.16 | 0.00000938 | ||||||
NoSymbol | tRNA-Ala | 5.71 | 0.00000042 | ||||||
NoSymbol | tRNA-Glu | 5.53 | 0.00000002 | ||||||
NoSymbol | tRNA-Ala | 6.22 | 0.00000005 | ||||||
NoSymbol | tRNA-Glu | 5.15 | 0.00000096 | ||||||
NoSymbol | tRNA-Val | 5.75 | 0.00000015 | ||||||
NoSymbol | tRNA-Asp | 5.48 | 0.00000072 | ||||||
NoSymbol | tRNA-Arg | 3.40 | 0.00000808 | ||||||
NoSymbol | tRNA-His | 4.80 | 0.00002568 | ||||||
glsB | --- | 7.51 | 0.00000003 | ||||||
pck | --- | 10.06 | 0.00000000 | ||||||
NoSymbol | P15 ncRNA | 7.29 | 0.00002737 | ||||||
NoSymbol | CrcZ ncRNA | -3.24 | 0.00000010 | ||||||
NoSymbol | RsmY ncRNA | -2.84 | 0.00043761 | ||||||
NoSymbol | tRNA-Arg | 4.91 | 0.00026828 | ||||||
NoSymbol | tRNA-Arg | 5.52 | 0.00000668 | ||||||
NoSymbol | tRNA-Arg | 4.68 | 0.00019514 | ||||||
NoSymbol | tRNA-Ser | 3.65 | 0.00021290 | ||||||
NoSymbol | tRNA-Tyr | 5.61 | 0.00000005 | ||||||
NoSymbol | tRNA-Gly | 6.26 | 0.00000000 | ||||||
NoSymbol | tRNA-Thr | 17.66 | 0.00000000 | ||||||
NoSymbol | tRNA-Trp | 3.39 | 0.00002676 | ||||||
NoSymbol | PrrF ncRNA | -5.42 | 0.00001301 | ||||||
NoSymbol | CrcZ ncRNA | -5.59 | 0.00000000 | ||||||
NoSymbol | tRNA-Met | 4.86 | 0.00000556 | ||||||
NoSymbol | tRNA-Leu | 3.71 | 0.00002381 | ||||||
NoSymbol | Alpha_RBS regulatory region | 7.94 | 0.00000000 | ||||||
NoSymbol | tRNA-Leu | 5.33 | 0.00000083 | ||||||
NoSymbol | tRNA-Leu | 5.46 | 0.00003516 | ||||||
NoSymbol | SAH_riboswitch regulatory region | 4.25 | 0.00000742 | ||||||
NoSymbol | Pseudomon-Rho regulatory region | 3.92 | 0.00003294 | ||||||
NoSymbol | tRNA-Asn | 3.69 | 0.00033946 | ||||||
NoSymbol | YybP-YkoY | 7.00 | 0.00000000 |
A
B
C
D
E
F
G
H
I
J
K
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
Supplementary Table S5. DAVID Functional analysis results for 6 hours comparison | ||||||||||
Category | Term | Genes (DAVID accession numbers) | List Total | Pop Hits | Pop Total | Count | % | P-Value | Benjamini | -log10(PValue) |
GOTERM_MF_DIRECT | GO:0003735 structural constituent of ribosome | 1044200, 1044517, 1044199, 1044204, 1044516, 1044227, 1044202, 1044228, 1044201, 1042258, 1044244, 1044241, 1044206, 1044242, 1044209, 1044192, 1044193, 1045775, 1043485, 1043991, 1043893, 1044189, 1044188, 1043891, 1044210, 1044101, 1044414, 1043837 | 323 | 54 | 3273 | 28 | 6 | 3.8E-14 | 9.1E-12 | 13.420216403383188 |
GOTERM_BP_DIRECT | GO:0006412 translation | 1044200, 1044517, 1044199, 1044204, 1044516, 1044227, 1044202, 1044228, 1044201, 1042258, 1044244, 1044241, 1044206, 1044242, 1044209, 1044192, 1044193, 1045775, 1043485, 1043991, 1043549, 1043893, 1044189, 1044188, 1043891, 1044210, 1044838, 1044101, 1044414, 1043837 | 248 | 62 | 2269 | 30 | 6.5 | 3.9E-13 | 6.0E-11 | 12.4089353929735 |
GOTERM_CC_DIRECT | GO:0005840 ribosome | 1044200, 1043991, 1044517, 1044199, 1043893, 1044189, 1044188, 1044516, 1043891, 1044227, 1044202, 1044228, 1044201, 1042258, 1044241, 1044242, 1044210, 1044101, 1044414, 1045775, 1043485, 1043837 | 218 | 42 | 2035 | 22 | 4.7 | 1.1E-10 | 3.5E-9 | 9.958607314841775 |
KEGG_PATHWAY | ppu00190: Oxidative phosphorylation | 1042262, 1044317, 1044661, 1042266, 1042396, 1042277, 1042269, 1042285, 1041621, 1042273, 1042274, 1042283, 1042025, 1042426, 1045401, 1042014, 1042613, 1042016, 1042018, 1042421, 1041990, 1045265, 1042260, 1046071, 1042005 | 187 | 51 | 1575 | 25 | 5.4 | 1.8E-10 | 1.5E-8 | 9.744727494896694 |
GOTERM_MF_DIRECT | GO:0019843 rRNA binding | 1044200, 1043991, 1043893, 1044204, 1044516, 1044227, 1044202, 1044228, 1044201, 1044244, 1044206, 1044241, 1044242, 1044210, 1044209, 1044192, 1044193, 1044414, 1043837 | 323 | 35 | 3273 | 19 | 4.1 | 4.5E-10 | 5.4E-8 | 9.346787486224656 |
KEGG_PATHWAY | ppu00020: Citrate cycle (TCA cycle) | 1044044, 1044342, 1044340, 1042396, 1044785, 1044339, 1042406, 1042423, 1042414, 1042426, 1042413, 1042613, 1045338, 1042422, 1044855, 1042421, 1042391, 1044477 | 187 | 32 | 1575 | 18 | 3.9 | 9.7E-9 | 4.0E-7 | 8.013228265733755 |
KEGG_PATHWAY | ppu01120: Microbial metabolism in diverse environments | 1044346, 1042253, 1044345, 1044342, 1046257, 1044340, 1042396, 1043939, 1042406, 1045402, 1042613, 1046926, 1042391, 1046726, 1042092, 1046807, 1046808, 1046845, 1042860, 1045004, 1042365, 1044785, 1042525, 1044339, 1046512, 1046613, 1046612, 1044855, 1044477, 1046812, 1044366, 1046818, 1041814, 1044137, 1045925, 1041590, 1044222, 1046507, 1044904, 1042423, 1042426, 1046180, 1042422, 1042421, 1043755, 1047015, 1045930, 1044044, 1041755, 1042490, 1044648, 1041851, 1044929, 1046932, 1042414, 1042413, 1045338, 1041608, 1041607, 1043023, 1047012 | 187 | 262 | 1575 | 61 | 13.1 | 1.4E-8 | 3.8E-7 | 7.853871964321761 |
KEGG_PATHWAY | ppu03010: Ribosome | 1044200, 1044517, 1044199, 1044204, 1044516, 1044227, 1044202, 1044228, 1044201, 1042258, 1044244, 1044241, 1044206, 1044242, 1044209, 1044192, 1044193, 1045775, 1043485, 1043991, 1043893, 1044189, 1044188, 1043891, 1044210, 1044101, 1044414, 1043837 | 187 | 76 | 1575 | 28 | 6 | 2.5E-8 | 5.1E-7 | 7.602059991327962 |
GOTERM_BP_DIRECT | GO:0006352 DNA-templated transcription, initiation | 1043685, 1042732, 1043876, 1041651, 1046334, 1044941, 1044059, 1042166, 1042476, 1045054, 1044535, 1042506, 1044491 | 248 | 21 | 2269 | 13 | 2.8 | 2.6E-7 | 2.0E-5 | 6.585026652029182 |
GOTERM_MF_DIRECT | GO:0016987 sigma factor activity | 1043685, 1042732, 1043876, 1041651, 1046334, 1044941, 1044059, 1042166, 1042476, 1045054, 1044535, 1042506, 1044491 | 323 | 25 | 3273 | 13 | 2.8 | 1.1E-6 | 8.6E-5 | 5.958607314841775 |
GOTERM_MF_DIRECT | GO:0046933 proton-transporting ATP synthase activity, rotational mechanism | 1042025, 1042014, 1042016, 1042018, 1045265, 1042005, 1046071 | 323 | 7 | 3273 | 7 | 1.5 | 5.6E-6 | 3.3E-4 | 5.251811972993799 |
GOTERM_MF_DIRECT | GO:0008137 NADH dehydrogenase (ubiquinone) activity | 1042262, 1045401, 1042269, 1042285, 1041621, 1042260, 1042273, 1042283 | 323 | 10 | 3273 | 8 | 1.7 | 7.7E-6 | 3.7E-4 | 5.113509274827518 |
GOTERM_BP_DIRECT | GO:0015986 ATP synthesis coupled proton transport | 1042025, 1042014, 1041990, 1042018, 1045265, 1042005, 1046071 | 248 | 7 | 2269 | 7 | 1.5 | 1.0E-5 | 5.1E-4 | 5 |
KEGG_PATHWAY | ppu01130: Biosynthesis of antibiotics | 1044346, 1044345, 1044342, 1044340, 1046257, 1042396, 1045534, 1044248, 1044348, 1045533, 1042406, 1042613, 1042391, 1046726, 1042092, 1042860, 1045004, 1042365, 1044785, 1044339, 1044855, 1044477, 1044327, 1047007, 1045513, 1044137, 1041814, 1044224, 1041649, 1046542, 1046744, 1044904, 1042423, 1042426, 1042422, 1042421, 1044044, 1043224, 1044931, 1044932, 1041851, 1046932, 1042414, 1043606, 1042413, 1044738, 1045338, 1041607, 1043023, 1044555 | 187 | 235 | 1575 | 50 | 10.8 | 1.0E-5 | 1.7E-4 | 5 |
KEGG_PATHWAY | ppu00364: Fluorobenzoate degradation | 1046812, 1046807, 1046808, 1046845, 1045930, 1046818, 1046512 | 187 | 7 | 1575 | 7 | 1.5 | 1.6E-5 | 2.2E-4 | 4.795880017344074 |
KEGG_PATHWAY | ppu01200: Carbon metabolism | 1044346, 1042253, 1044345, 1044342, 1044340, 1042396, 1044137, 1041814, 1044248, 1042406, 1042423, 1044904, 1042426, 1042613, 1042422, 1042421, 1042391, 1044044, 1042860, 1045004, 1042490, 1042365, 1044785, 1044339, 1044929, 1043606, 1042414, 1042413, 1045338, 1043023, 1044855, 1044477 | 187 | 127 | 1575 | 32 | 6.9 | 2.6E-5 | 3.0E-4 | 4.585026652029182 |
GOTERM_BP_DIRECT | GO:0006099 tricarboxylic acid cycle | 1042414, 1042423, 1042413, 1042426, 1042396, 1042613, 1045338, 1042422, 1044855, 1042421, 1044477 | 248 | 22 | 2269 | 11 | 2.4 | 3.9E-5 | 0.0015 | 4.4089353929735005 |
KEGG_PATHWAY | ppu01100: Metabolic pathways | 1044346, 1042253, 1044345, 1044342, 1043982, 1046257, 1044340, 1044348, 1042402, 1042406, 1045402, 1045401, 1045604, 1046807, 1046808, 1042262, 1046845, 1045219, 1042860, 1045004, 1042266, 1042365, 1042269, 1042525, 1044339, 1044855, 1042260, 1046812, 1044366, 1046818, 1041702, 1041814, 1044137, 1045925, 1044224, 1044698, 1041590, 1044222, 1042423, 1042426, 1042422, 1042421, 1043755, 1045265, 1043757, 1044565, 1045930, 1044044, 1044291, 1041616, 1044930, 1043224, 1044148, 1041802, 1042490, 1044931, 1044932, 1044929, 1042414, 1044738, 1042413, 1046171, 1041608, 1041607, 1043023, 1041990, 1044555, 1043164, 1042396, 1043939, 1041621, 1045534, 1045533, 1042014, 1042613, 1043805, 1042016, 1046726, 1042018, 1042391, 1042092, 1044785, 1046512, 1042025, 1046613, 1046612, 1044477, 1044327, 1047007, 1045513, 1042277, 1042273, 1042274, 1041649, 1046542, 1046744, 1041844, 1043798, 1044904, 1042130, 1047015, 1044661, 1042285, 1042283, 1044838, 1041851, 1046932, 1045338, 1045133, 1045586, 1047012, 1046071, 1042005 | 187 | 755 | 1575 | 113 | 24.3 | 2.4E-4 | 0.0024 | 3.6197887582883936 |
KEGG_PATHWAY | ppu00362: Benzoate degradation | 1046807, 1046812, 1046808, 1046845, 1045930, 1042860, 1041755, 1046818, 1043939, 1045925, 1046512, 1046932, 1046613, 1046612 | 187 | 39 | 1575 | 14 | 3 | 2.9E-4 | 0.0026 | 3.5376020021010435 |
KEGG_PATHWAY | ppu01220: Degradation of aromatic compounds | 1046812, 1046807, 1046808, 1046845, 1045930, 1046818, 1046726, 1043939, 1045925, 1046512 | 187 | 22 | 1575 | 10 | 2.2 | 4.7E-4 | 0.0038 | 3.3279021420642825 |
GOTERM_CC_DIRECT | GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) | 1042025, 1042014, 1042016, 1042018, 1042005 | 218 | 5 | 2035 | 5 | 1.1 | 5.8E-4 | 0.0092 | 3.2365720064370627 |
GOTERM_MF_DIRECT | GO:0000049 tRNA binding | 1044199, 1046544, 1041702, 1044241, 1044192, 1045214, 1044193, 1043484, 1044210 | 323 | 22 | 3273 | 9 | 1.9 | 7.5E-4 | 0.029 | 3.1249387366082995 |
GOTERM_MF_DIRECT | GO:0048038 quinone binding | 1042262, 1042266, 1042277, 1042269, 1042285, 1041621, 1042260 | 323 | 14 | 3273 | 7 | 1.5 | 0.0013 | 0.044 | 2.886056647693163 |
GOTERM_MF_DIRECT | GO:0004601 peroxidase activity | 1043789, 1045103, 1045608, 1046468, 1045549, 1043570 | 323 | 10 | 3273 | 6 | 1.3 | 0.0015 | 0.044 | 2.823908740944318 |
GOTERM_CC_DIRECT | GO:0015935 small ribosomal subunit | 1044204, 1044244, 1044192, 1044193, 1044209 | 218 | 7 | 2035 | 5 | 1.1 | 0.0034 | 0.036 | 2.4685210829577446 |
GOTERM_CC_DIRECT | GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) | 1042004, 1041990, 1045265, 1046071 | 218 | 4 | 2035 | 4 | 0.9 | 0.0044 | 0.035 | 2.356547323513812 |
GOTERM_MF_DIRECT | GO:0051920 peroxiredoxin activity | 1043789, 1045103, 1045608, 1046468, 1045549 | 323 | 8 | 3273 | 5 | 1.1 | 0.0047 | 0.12 | 2.3279021420642825 |
KEGG_PATHWAY | ppu00620: Pyruvate metabolism | 1044346, 1044345, 1044044, 1044342, 1042860, 1044340, 1044785, 1046419, 1044339, 1043023, 1044855, 1042391, 1044477 | 187 | 46 | 1575 | 13 | 2.8 | 0.0053 | 0.039 | 2.275724130399211 |
GOTERM_MF_DIRECT | GO:0003746 translation elongation factor activity | 1045850, 1044182, 1043241, 1044195, 1044196 | 323 | 9 | 3273 | 5 | 1.1 | 0.0078 | 0.17 | 2.107905397309519 |
GOTERM_MF_DIRECT | GO:0031177 phosphopantetheine binding | 1044150, 1042489, 1042600, 1042549 | 323 | 5 | 3273 | 4 | 0.9 | 0.0081 | 0.16 | 2.09151498112135 |
GOTERM_BP_DIRECT | GO:0009058 biosynthetic process | 1046744, 1043224, 1041995, 1042489, 1044669, 1042513, 1043501 | 248 | 18 | 2269 | 7 | 1.5 | 0.0094 | 0.25 | 2.0268721464003012 |
KEGG_PATHWAY | ppu01110: Biosynthesis of secondary metabolites | 1044346, 1042253, 1044345, 1044342, 1044340, 1046257, 1042396, 1045534, 1044248, 1044348, 1045533, 1042402, 1042406, 1042613, 1042391, 1046726, 1042092, 1042860, 1045004, 1042365, 1044785, 1044339, 1044855, 1044477, 1044327, 1047007, 1045513, 1044137, 1041814, 1044224, 1046542, 1044904, 1042423, 1042426, 1042422, 1042421, 1044565, 1044044, 1044291, 1043224, 1044148, 1044931, 1044932, 1041851, 1046932, 1043606, 1042414, 1042413, 1044738, 1045338, 1043023, 1044555 | 187 | 334 | 1575 | 52 | 11.2 | 0.019 | 0.12 | 1.721246399047171 |
GOTERM_BP_DIRECT | GO:0042773 ATP synthesis coupled electron transport | 1042269, 1042285, 1042273, 1042283 | 248 | 6 | 2269 | 4 | 0.9 | 0.02 | 0.4 | 1.6989700043360185 |
KEGG_PATHWAY | ppu00622: Xylene degradation | 1046807, 1046808, 1046845, 1046818 | 187 | 6 | 1575 | 4 | 0.9 | 0.025 | 0.15 | 1.6020599913279623 |
GOTERM_MF_DIRECT | GO:0018623 benzoate 1,2-dioxygenase activity | 1046807, 1046808, 1046845 | 323 | 3 | 3273 | 3 | 0.6 | 0.027 | 0.42 | 1.5686362358410126 |
GOTERM_MF_DIRECT | GO:0008177 succinate dehydrogenase (ubiquinone) activity | 1042426, 1042396, 1042421 | 323 | 3 | 3273 | 3 | 0.6 | 0.027 | 0.42 | 1.5686362358410126 |
GOTERM_MF_DIRECT | GO:0046961 proton-transporting ATPase activity, rotational mechanism | 1042025, 1042014, 1042016 | 323 | 3 | 3273 | 3 | 0.6 | 0.027 | 0.42 | 1.5686362358410126 |
GOTERM_CC_DIRECT | GO:0005623 cell | 1044249, 1042429, 1043789, 1045103, 1045608, 1045026, 1045609, 1042391 | 218 | 29 | 2035 | 8 | 1.7 | 0.029 | 0.17 | 1.5376020021010437 |
GOTERM_BP_DIRECT | GO:0015991 ATP hydrolysis coupled proton transport | 1042014, 1041990, 1042005 | 248 | 3 | 2269 | 3 | 0.6 | 0.033 | 0.52 | 1.4814860601221123 |
KEGG_PATHWAY | ppu00361: Chlorocyclohexane and chlorobenzene degradation | 1046812, 1045930, 1046512 | 187 | 3 | 1575 | 3 | 0.6 | 0.038 | 0.2 | 1.4202164033831897 |
KEGG_PATHWAY | ppu00623: Toluene degradation | 1046812, 1045930, 1046512 | 187 | 3 | 1575 | 3 | 0.6 | 0.038 | 0.2 | 1.4202164033831897 |
KEGG_PATHWAY | ppu00650: Butanoate metabolism | 1044336, 1046932, 1042860, 1047007, 1042426, 1042396, 1042613, 1042421, 1043755, 1043757 | 187 | 41 | 1575 | 10 | 2.2 | 0.045 | 0.22 | 1.346787486224656 |
GOTERM_MF_DIRECT | GO:0008199 ferric iron binding | 1046812, 1044249, 1045930, 1045026 | 323 | 9 | 3273 | 4 | 0.9 | 0.051 | 0.62 | 1.2924298239020635 |
GOTERM_MF_DIRECT | GO:0003989 acetyl-CoA carboxylase activity | 1044346, 1044345, 1043023 | 323 | 4 | 3273 | 3 | 0.6 | 0.051 | 0.59 | 1.2924298239020635 |
KEGG_PATHWAY | ppu00350: Tyrosine metabolism | 1046171, 1041608, 1046726, 1041590, 1043755, 1044222 | 187 | 18 | 1575 | 6 | 1.3 | 0.052 | 0.24 | 1.2839966563652008 |
GOTERM_BP_DIRECT | GO:0009072 aromatic amino acid family metabolic process | 1046171, 1041608, 1044222 | 248 | 4 | 2269 | 3 | 0.6 | 0.061 | 0.7 | 1.2146701649892329 |
KEGG_PATHWAY | ppu00640: Propanoate metabolism | 1044346, 1044345, 1046932, 1042406, 1042860, 1042414, 1045338, 1043023 | 187 | 31 | 1575 | 8 | 1.7 | 0.064 | 0.27 | 1.1938200260161127 |
KEGG_PATHWAY | ppu00310: Lysine degradation | 1046932, 1042860, 1042423, 1042413, 1043755, 1043757 | 187 | 20 | 1575 | 6 | 1.3 | 0.077 | 0.31 | 1.113509274827518 |
KEGG_PATHWAY | ppu00010: Glycolysis / Gluconeogenesis | 1044044, 1044342, 1045004, 1044904, 1044340, 1042365, 1046726, 1042391, 1044339 | 187 | 40 | 1575 | 9 | 1.9 | 0.09 | 0.33 | 1.0457574905606752 |
KEGG_PATHWAY | ppu03018: RNA degradation | 1042415, 1045958, 1044904, 1043228, 1043177 | 187 | 15 | 1575 | 5 | 1.1 | 0.091 | 0.32 | 1.0409586076789064 |
GOTERM_MF_DIRECT | GO:0005506 iron ion binding | 1046807, 1046487, 1042262, 1041989, 1046803, 1042530, 1042277, 1041590, 1044732, 1044705, 1046507, 1044057 | 323 | 72 | 3273 | 12 | 2.6 | 0.091 | 0.78 | 1.0409586076789064 |
GOTERM_MF_DIRECT | GO:0046872 metal ion binding | 1044327, 1044345, 1044137, 1041814, 1044248, 1042274, 1045402, 1042613, 1046180, 1046808, 1043549, 1043893, 1044370, 1045006, 1044148, 1042863, 1042269, 1045214, 1046419, 1044839, 1044816, 1043606, 1046171, 1045338, 1044859 | 323 | 185 | 3273 | 25 | 5.4 | 0.092 | 0.77 | 1.0362121726544447 |
GOTERM_MF_DIRECT | GO:0051536 iron-sulfur cluster binding | 1046188, 1042462, 1042396, 1044705, 1042092 | 323 | 18 | 3273 | 5 | 1.1 | 0.093 | 0.75 | 1.0315170514460648 |
GOTERM_BP_DIRECT | GO:0019545 arginine catabolic process to succinate | 1041844, 1043982, 1043805 | 248 | 5 | 2269 | 3 | 0.6 | 0.095 | 0.82 | 1.0222763947111522 |
A
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Supplementary Table S6. DAVID functional analysis results for 12 hours comparison | ||||||||||
Category | Term | Genes (DAVID accession numbers) | List Total | Pop Hits | Pop Total | Count | % | P-Value | Benjamini | -log10(PValue) |
KEGG_PATHWAY | ppu02040: Flagellar assembly | 1042637, 1044605, 1041605, 1043101, 1041829, 1041827, 1042454, 1042481, 1045242, 1041836, 1045701, 1045714, 1041825, 1042471, 1042309, 1043820, 1044376, 1046146, 1041797, 1042947 | 103 | 35 | 1575 | 20 | 7.3 | 8.5E-15 | 4.7E-13 | 14.0705811 |
GOTERM_CC_DIRECT | GO:0031514 motile cilium | 1042637, 1044605, 1041605, 1043101, 1041829, 1045204, 1041827, 1045202, 1042454, 1042481, 1045242, 1041836, 1045701, 1045714, 1041825, 1042471, 1044726, 1043820, 1046146, 1042947 | 139 | 37 | 2035 | 20 | 7.3 | 1.2E-13 | 3.0E-12 | 12.9208188 |
GOTERM_BP_DIRECT | GO:0071973 bacterial-type flagellum-dependent cell motility | 1044605, 1041605, 1041829, 1042454, 1042481, 1041836, 1045714, 1041825, 1042471, 1042309, 1043820, 1044376, 1041797, 1042947 | 139 | 20 | 2269 | 14 | 5.1 | 4.8E-12 | 5.5E-10 | 11.3187588 |
GOTERM_CC_DIRECT | GO:0005840 ribosome | 1044200, 1044517, 1044199, 1043893, 1043891, 1044516, 1044227, 1044228, 1042258, 1044101, 1044414, 1045775, 1043837, 1043485 | 139 | 42 | 2035 | 14 | 5.1 | 1.7E-6 | 2.2E-5 | 5.76955108 |
GOTERM_MF_DIRECT | GO:0003735 structural constituent of ribosome | 1044200, 1044517, 1044199, 1043893, 1043891, 1044516, 1044227, 1044228, 1042258, 1044101, 1044414, 1045775, 1043837, 1043485 | 170 | 54 | 3273 | 14 | 5.1 | 2.0E-6 | 2.9E-4 | 5.69897 |
GOTERM_BP_DIRECT | GO:0006412 translation | 1044200, 1043549, 1044517, 1044199, 1043893, 1044516, 1043891, 1044227, 1044228, 1042258, 1044838, 1044101, 1044414, 1045775, 1043837, 1043485 | 139 | 62 | 2269 | 16 | 5.8 | 2.1E-6 | 1.2E-4 | 5.67778071 |
GOTERM_MF_DIRECT | GO:0003774 motor activity | 1042454, 1041836, 1045714, 1044376, 1041797, 1042947 | 170 | 7 | 3273 | 6 | 2.2 | 6.7E-6 | 4.8E-4 | 5.1739252 |
GOTERM_CC_DIRECT | GO:0009425 bacterial-type flagellum basal body | 1041836, 1044605, 1045714, 1043101, 1041797, 1042947 | 139 | 11 | 2035 | 6 | 2.2 | 4.4E-4 | 0.0038 | 3.35654732 |
GOTERM_MF_DIRECT | GO:0008556 potassium-transporting ATPase activity | 26969968, 1042357, 1042354, 1042353 | 170 | 4 | 3273 | 4 | 1.5 | 5.2E-4 | 0.025 | 3.28399666 |
KEGG_PATHWAY | ppu03010: Ribosome | 1044200, 1044517, 1044199, 1043893, 1043891, 1044516, 1044227, 1044228, 1042258, 1044101, 1044414, 1045775, 1043837, 1043485 | 103 | 76 | 1575 | 14 | 5.1 | 8.1E-4 | 0.022 | 3.09151498 |
GOTERM_MF_DIRECT | GO:0019843 rRNA binding | 1044200, 1046554, 1043893, 1044516, 1044227, 1044228, 1044414, 1043837 | 170 | 35 | 3273 | 8 | 2.9 | 0.0017 | 0.059 | 2.76955108 |
GOTERM_MF_DIRECT | GO:0005524 ATP binding | 1045260, 1044327, 1046235, 1042357, 1044343, 1042354, 1045513, 1046544, 1041702, 1044224, 1041626, 1045202, 1044925, 1044288, 1042400, 1045877, 1046273, 1044394, 1045153, 1043228, 1043542, 1044838, 1046910, 1042415, 1043931, 1043605, 1041790, 1045154, 1042436, 1041607, 1046459, 1041972, 1045113, 1044555 | 170 | 405 | 3273 | 34 | 12.4 | 0.0042 | 0.11 | 2.37675071 |
GOTERM_MF_DIRECT | GO:0005198 structural molecule activity | 1042481, 1042471, 1042309, 1041797 | 170 | 8 | 3273 | 4 | 1.5 | 0.0062 | 0.14 | 2.20760831 |
GOTERM_BP_DIRECT | GO:0044781 bacterial-type flagellum organization | 1042637, 1043101, 1045204, 1041827 | 139 | 7 | 2269 | 4 | 1.5 | 0.0064 | 0.22 | 2.19382003 |
GOTERM_MF_DIRECT | GO:0004601 peroxidase activity | 1043789, 1045103, 1045608, 1043570 | 170 | 10 | 3273 | 4 | 1.5 | 0.012 | 0.23 | 1.92081875 |
GOTERM_CC_DIRECT | GO:0030694 bacterial-type flagellum basal body, rod | 1041825, 1041605, 1041829 | 139 | 3 | 2035 | 3 | 1.1 | 0.013 | 0.082 | 1.88605665 |
KEGG_PATHWAY | ppu00020: Citrate cycle (TCA cycle) | 1043665, 1044342, 1044340, 1042422, 1044855, 1046547, 1044339 | 103 | 32 | 1575 | 7 | 2.6 | 0.015 | 0.24 | 1.82390874 |
KEGG_PATHWAY | ppu01130: Biosynthesis of antibiotics | 1044327, 1044342, 1046257, 1044340, 1043224, 1045513, 1042365, 1044224, 1046547, 1044248, 1044348, 1041649, 1044339, 1046542, 1043665, 1044925, 1042436, 1042422, 1044855, 1041607, 1042159, 1044879, 1045317, 1044555 | 103 | 235 | 1575 | 24 | 8.8 | 0.022 | 0.27 | 1.65757732 |
GOTERM_BP_DIRECT | GO:0006935 chemotaxis | 1041836, 1045714, 1045448, 1041629, 1043822, 1042947, 1043780 | 139 | 37 | 2269 | 7 | 2.6 | 0.022 | 0.47 | 1.65757732 |
KEGG_PATHWAY | ppu00620: Pyruvate metabolism | 1043665, 1044925, 1044342, 1044340, 1042436, 1044855, 1046419, 1044339 | 103 | 46 | 1575 | 8 | 2.9 | 0.026 | 0.25 | 1.58502665 |
GOTERM_BP_DIRECT | GO:0045454 cell redox homeostasis | 1042429, 1043789, 1045007, 1045103, 1045608, 1045609 | 139 | 30 | 2269 | 6 | 2.2 | 0.032 | 0.53 | 1.49485002 |
GOTERM_MF_DIRECT | GO:0016987 sigma factor activity | 1043685, 1042166, 1045054, 1046334, 1044726 | 170 | 25 | 3273 | 5 | 1.8 | 0.037 | 0.49 | 1.43179828 |
GOTERM_CC_DIRECT | GO:0005623 cell | 1042429, 1043789, 1045103, 1045608, 1045026, 1045609 | 139 | 29 | 2035 | 6 | 2.2 | 0.042 | 0.2 | 1.37675071 |
GOTERM_BP_DIRECT | GO:0006189 'de novo' IMP biosynthetic process | 1044327, 1044224, 1042159, 1046542 | 139 | 14 | 2269 | 4 | 1.5 | 0.049 | 0.62 | 1.30980392 |
GOTERM_MF_DIRECT | GO:0051920 peroxiredoxin activity | 1043789, 1045103, 1045608 | 170 | 8 | 3273 | 3 | 1.1 | 0.06 | 0.63 | 1.22184875 |
KEGG_PATHWAY | ppu02030: Bacterial chemotaxis | 1041836, 1045714, 1045448, 1042670, 1043822, 1042947, 1043780 | 103 | 46 | 1575 | 7 | 2.6 | 0.072 | 0.5 | 1.1426675 |
GOTERM_MF_DIRECT | GO:0003746 translation elongation factor activity | 1045850, 1044182, 1043241 | 170 | 9 | 3273 | 3 | 1.1 | 0.075 | 0.67 | 1.12493874 |
GOTERM_BP_DIRECT | GO:0044780 bacterial-type flagellum assembly | 1042481, 1045242, 1042627 | 139 | 9 | 2269 | 3 | 1.1 | 0.1 | 0.82 | 1 |
A
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Supplementary Table S7. DAVID functional analysis results for 24 hours comparison | ||||||||||
Category | Term | Genes (DAVID accession numbers) | List Total | Pop Hits | Pop Total | Count | % | P-Value | Benjamini | -log10(PValue) |
KEGG_PATHWAY | ppu02040: Flagellar assembly | 1044605, 1042637, 1043042, 1041605, 1043101, 1041829, 1041827, 1043501, 1042454, 1042481, 1045242, 1041836, 1045701, 1045714, 1041825, 1042471, 1042309, 1043820, 1044376, 1046146, 1041797, 1042947 | 269 | 35 | 1575 | 22 | 3 | 8.3E-9 | 8.0E-7 | 8.08092191 |
GOTERM_CC_DIRECT | GO:0031514 motile cilium | 1042637, 1044605, 1043042, 1041605, 1043101, 1041829, 1045204, 1041827, 1045202, 1042454, 1042481, 1045242, 1041836, 1045701, 1045714, 1041825, 1042471, 1044726, 1043820, 1046146, 1042947 | 306 | 37 | 2035 | 21 | 2.9 | 2.6E-8 | 1.1E-6 | 7.58502665 |
GOTERM_BP_DIRECT | GO:0071973 bacterial-type flagellum-dependent cell motility | 1044605, 1041605, 1041829, 1043501, 1042454, 1042481, 1041836, 1045714, 1041825, 1042471, 1042309, 1043820, 1044376, 1041797, 1042947 | 355 | 20 | 2269 | 15 | 2 | 6.3E-8 | 1.5E-5 | 7.20065945 |
GOTERM_CC_DIRECT | GO:0005840 ribosome | 1044200, 1044517, 1044199, 1043893, 1044188, 1044516, 1043891, 1044227, 1044228, 1044230, 1042258, 1044241, 1041596, 1044242, 1044101, 1045770, 1042057, 1044414, 1045775, 1043485, 1043837 | 306 | 42 | 2035 | 21 | 2.9 | 4.0E-7 | 8.9E-6 | 6.39794001 |
GOTERM_MF_DIRECT | GO:0003735 structural constituent of ribosome | 1044200, 1044517, 1044199, 1043893, 1044188, 1044516, 1043891, 1044227, 1044228, 1044230, 1042258, 1041596, 1044241, 1044242, 1044101, 1044192, 1044193, 1042057, 1044414, 1045775, 1043485, 1043837, 1045137 | 459 | 54 | 3273 | 23 | 3.1 | 1.0E-6 | 3.4E-4 | 6 |
GOTERM_BP_DIRECT | GO:0006412 translation | 1044200, 1044517, 1044199, 1044516, 1044227, 1044228, 1042258, 1044241, 1041596, 1044242, 1044192, 1044193, 1042057, 1045775, 1043485, 1043549, 1043893, 1043891, 1044188, 1044230, 1044838, 1044835, 1044101, 1044414, 1043837, 1045137 | 355 | 62 | 2269 | 26 | 3.5 | 1.7E-6 | 2.1E-4 | 5.76955108 |
GOTERM_CC_DIRECT | GO:0005737 cytoplasm | 1045634, 1045842, 1044343, 1042815, 1046257, 1044305, 1042359, 1044580, 1044776, 1041626, 1045671, 1045672, 1041726, 1045635, 1045845, 1043486, 1044726, 1042960, 1042055, 1043631, 1044722, 1042400, 1042723, 1045007, 1042365, 1044626, 1045214, 1043241, 1046554, 1045159, 1046556, 1042024, 1043356, 1045491, 1044327, 1043172, 1044366, 1041912, 1045513, 1046544, 1041702, 1044943, 1044224, 1044947, 1043278, 1045921, 1042427, 1044690, 1044749, 1041880, 1042422, 1046087, 1043073, 1044317, 1044930, 1043228, 1043542, 1042841, 1041658, 1043501, 1043472, 1045333, 1042185, 1045885, 1042381, 1042885, 1046100, 1045889, 1041992, 1045888, 1044182, 1045133, 1046075, 1045278, 1044553, 1043838, 1043780 | 306 | 345 | 2035 | 77 | 10.5 | 7.6E-5 | 0.0011 | 4.11918641 |
KEGG_PATHWAY | ppu01130: Biosynthesis of antibiotics | 1044346, 1044345, 1044342, 1046257, 1044340, 1044303, 1043987, 1045534, 1044248, 1045080, 1044348, 1045533, 1044925, 1042613, 1042960, 1042391, 1044722, 1042159, 1041966, 1042365, 1044785, 1044234, 1044339, 1044914, 1045159, 1045317, 1044477, 1044327, 1043230, 1041911, 1047007, 1042276, 1045513, 1041814, 1044137, 1044224, 1046547, 1041646, 1046542, 1046744, 1043271, 1044904, 1042426, 1042422, 1045508, 1044044, 1043224, 1045333, 1046932, 1045885, 1043606, 1044870, 1046100, 1044738, 1045338, 1041607, 1043023, 1044879, 1044553, 1044555 | 269 | 235 | 1575 | 60 | 8.2 | 4.0E-4 | 0.019 | 3.39794001 |
GOTERM_MF_DIRECT | GO:0019843 rRNA binding | 1044200, 1043893, 1044516, 1044227, 1044228, 1044230, 1044241, 1044242, 1046554, 1044192, 1044193, 1044414, 1042057, 1043837 | 459 | 35 | 3273 | 14 | 1.9 | 5.2E-4 | 0.083 | 3.28399666 |
GOTERM_MF_DIRECT | GO:0003774 motor activity | 1042454, 1041836, 1045714, 1044376, 1041797, 1042947 | 459 | 7 | 3273 | 6 | 0.8 | 8.7E-4 | 0.092 | 3.06048075 |
GOTERM_MF_DIRECT | GO:0000049 tRNA binding | 1044199, 1041701, 1045889, 1046544, 1041702, 1044241, 1044192, 1045214, 1044193, 1043484 | 459 | 22 | 3273 | 10 | 1.4 | 0.0017 | 0.14 | 2.76955108 |
KEGG_PATHWAY | ppu01200: Carbon metabolism | 1044346, 1042253, 1044345, 1044342, 1041911, 1044340, 1041814, 1043987, 1044137, 1046547, 1044248, 1041646, 1045080, 1045894, 1044925, 1044904, 1042426, 1042613, 1042422, 1042391, 1044044, 1045045, 1042365, 1045046, 1044785, 1044339, 1044914, 1045885, 1043606, 1045719, 1045338, 1043023, 1044879, 1044553, 1044477 | 269 | 127 | 1575 | 35 | 4.8 | 0.0026 | 0.08 | 2.58502665 |
GOTERM_MF_DIRECT | GO:0046872 metal ion binding | 1045634, 1044327, 1044345, 1044580, 1041814, 1044137, 1046547, 1044248, 1044918, 1041700, 1041726, 1042966, 1045402, 1045143, 1043652, 1042613, 1046180, 1045597, 1043549, 1043893, 1042681, 1045006, 1043578, 1044148, 1043263, 1045230, 1044787, 1045214, 1046419, 1045049, 1041698, 1044839, 1042002, 1044873, 1045865, 1044816, 1043606, 1044870, 1045338, 1046453 | 459 | 185 | 3273 | 40 | 5.4 | 0.0043 | 0.25 | 2.36653154 |
KEGG_PATHWAY | ppu03010: Ribosome | 1044200, 1044517, 1044199, 1043893, 1044188, 1044516, 1043891, 1044227, 1044228, 1044230, 1042258, 1041596, 1044241, 1044242, 1044101, 1044192, 1044193, 1042057, 1044414, 1045775, 1043485, 1043837, 1045137 | 269 | 76 | 1575 | 23 | 3.1 | 0.0056 | 0.13 | 2.25181197 |
KEGG_PATHWAY | ppu01110: Biosynthesis of secondary metabolites | 1044346, 1042253, 1044345, 1044342, 1046257, 1044340, 1044514, 1044303, 1044580, 1043987, 1044248, 1045534, 1045080, 1044348, 1045533, 1044925, 1045143, 1044583, 1042613, 1042960, 1042391, 1042113, 1044722, 1042159, 1041966, 1043422, 1045009, 1042365, 1044785, 1044234, 1045952, 1044339, 1044914, 1045159, 1045317, 1042120, 1044477, 1044329, 1044327, 1043230, 1047007, 1046895, 1045513, 1042276, 1041814, 1044137, 1044224, 1046547, 1041646, 1046542, 1044886, 1043271, 1044904, 1042426, 1042422, 1041981, 1044565, 1045508, 1044044, 1044291, 1043224, 1044148, 1042185, 1046932, 1045885, 1043606, 1044870, 1044738, 1045338, 1041992, 1043023, 1044879, 1044553, 1044555 | 269 | 334 | 1575 | 74 | 10.1 | 0.0059 | 0.11 | 2.22914799 |
GOTERM_CC_DIRECT | GO:0005623 cell | 1044249, 1042429, 1043789, 1041936, 1045103, 1045608, 1044754, 1045609, 1042391, 1046746, 1046822 | 306 | 29 | 2035 | 11 | 1.5 | 0.007 | 0.074 | 2.15490196 |
KEGG_PATHWAY | ppu00061: Fatty acid biosynthesis | 1044346, 1044925, 1044345, 1042381, 1045719, 1044943, 1043023, 1046532, 1043164 | 269 | 19 | 1575 | 9 | 1.2 | 0.0086 | 0.13 | 2.06550155 |
GOTERM_MF_DIRECT | GO:0003989 acetyl-CoA carboxylase activity | 1044346, 1044925, 1044345, 1043023 | 459 | 4 | 3273 | 4 | 0.5 | 0.0098 | 0.42 | 2.00877392 |
GOTERM_MF_DIRECT | GO:0008556 potassium-transporting ATPase activity | 26969968, 1042357, 1042354, 1042353 | 459 | 4 | 3273 | 4 | 0.5 | 0.0098 | 0.42 | 2.00877392 |
KEGG_PATHWAY | ppu00020: Citrate cycle (TCA cycle) | 1044044, 1044342, 1044340, 1042426, 1042613, 1045338, 1042422, 1042391, 1046547, 1044785, 1044477, 1044339 | 269 | 32 | 1575 | 12 | 1.6 | 0.013 | 0.16 | 1.88605665 |
GOTERM_BP_DIRECT | GO:0006633 fatty acid biosynthetic process | 1044346, 1044925, 1042381, 1046895, 1045719, 1044943, 1043023, 1046532 | 355 | 18 | 2269 | 8 | 1.1 | 0.014 | 0.69 | 1.85387196 |
GOTERM_CC_DIRECT | GO:0009425 bacterial-type flagellum basal body | 1041836, 1044605, 1045714, 1043101, 1041797, 1042947 | 306 | 11 | 2035 | 6 | 0.8 | 0.016 | 0.13 | 1.79588002 |
GOTERM_BP_DIRECT | GO:0009073 aromatic amino acid family biosynthetic process | 1043230, 1043271, 1045317, 1045534, 1045533, 1044348 | 355 | 12 | 2269 | 6 | 0.8 | 0.028 | 0.82 | 1.55284197 |
GOTERM_BP_DIRECT | GO:0045454 cell redox homeostasis | 1042429, 1043789, 1045007, 1045103, 1045608, 1044754, 1045609, 1042391, 1046746, 1046822 | 355 | 30 | 2269 | 10 | 1.4 | 0.034 | 0.81 | 1.46852108 |
KEGG_PATHWAY | ppu00620: Pyruvate metabolism | 1044346, 1044329, 1044345, 1044044, 1044342, 1044340, 1044785, 1046419, 1045080, 1044339, 1044925, 1043023, 1042391, 1044477 | 269 | 46 | 1575 | 14 | 1.9 | 0.037 | 0.37 | 1.43179828 |
GOTERM_MF_DIRECT | GO:0050660 flavin adenine dinucleotide binding | 1046873, 1046280, 1045007, 1042864, 1041701, 1046955, 1046822, 1045081, 1043472, 1043769, 1042179, 1045609, 1042391, 1041966, 1046746 | 459 | 61 | 3273 | 15 | 2 | 0.038 | 0.85 | 1.4202164 |
KEGG_PATHWAY | ppu00230: Purine metabolism | 1044327, 1042681, 1044930, 1043069, 1042276, 1045513, 1044148, 1046955, 1046956, 1041802, 1044224, 1044234, 1046542, 1045865, 1044583, 1041607, 1042159, 1046453, 1044553, 1044386 | 269 | 77 | 1575 | 20 | 2.7 | 0.051 | 0.43 | 1.29242982 |
GOTERM_MF_DIRECT | GO:0033727 aldehyde dehydrogenase (FAD-independent) activity | 1046955, 1046956, 1046453 | 459 | 3 | 3273 | 3 | 0.4 | 0.053 | 0.9 | 1.27572413 |
GOTERM_BP_DIRECT | GO:0006979 response to oxidative stress | 1045143, 1043606, 1045608, 1044248, 1044616, 1043570 | 355 | 14 | 2269 | 6 | 0.8 | 0.054 | 0.89 | 1.26760624 |
GOTERM_BP_DIRECT | GO:0006189 'de novo' IMP biosynthetic process | 1044327, 1044026, 1044224, 1042159, 1044234, 1046542 | 355 | 14 | 2269 | 6 | 0.8 | 0.054 | 0.89 | 1.26760624 |
KEGG_PATHWAY | ppu01212: Fatty acid metabolism | 1044346, 1044925, 1044345, 1046932, 1042381, 1045719, 1044943, 1043023, 1046532, 1045080, 1043164 | 269 | 35 | 1575 | 11 | 1.5 | 0.06 | 0.45 | 1.22184875 |
GOTERM_CC_DIRECT | GO:0009317 acetyl-CoA carboxylase complex | 1044346, 1044925, 1043023 | 306 | 3 | 2035 | 3 | 0.4 | 0.061 | 0.37 | 1.21467016 |
GOTERM_CC_DIRECT | GO:0030694 bacterial-type flagellum basal body, rod | 1041825, 1041605, 1041829 | 306 | 3 | 2035 | 3 | 0.4 | 0.061 | 0.37 | 1.21467016 |
GOTERM_BP_DIRECT | GO:0042744 hydrogen peroxide catabolic process | 1045143, 1043606, 1044248 | 355 | 3 | 2269 | 3 | 0.4 | 0.065 | 0.9 | 1.18708664 |
GOTERM_BP_DIRECT | GO:0000902 cell morphogenesis | 1043443, 1045333, 1044840 | 355 | 3 | 2269 | 3 | 0.4 | 0.065 | 0.9 | 1.18708664 |
GOTERM_BP_DIRECT | GO:0044781 bacterial-type flagellum organization | 1042637, 1043101, 1045204, 1041827 | 355 | 7 | 2269 | 4 | 0.5 | 0.081 | 0.92 | 1.09151498 |
KEGG_PATHWAY | ppu00500: Starch and sucrose metabolism | 1042139, 1046744, 1045885, 1042276, 1042130, 1042113, 1042120 | 269 | 19 | 1575 | 7 | 1 | 0.088 | 0.55 | 1.05551733 |
GOTERM_MF_DIRECT | GO:0005198 structural molecule activity | 1042481, 1042471, 1042309, 1041797 | 459 | 8 | 3273 | 4 | 0.5 | 0.089 | 0.97 | 1.05060999 |
GOTERM_MF_DIRECT | GO:0030976 thiamine pyrophosphate binding | 1045508, 1047007, 1044303, 1041966 | 459 | 8 | 3273 | 4 | 0.5 | 0.089 | 0.97 | 1.05060999 |
GOTERM_MF_DIRECT | GO:0005524 ATP binding | 1045634, 1043885, 1044345, 1043981, 1042357, 1043843, 1044343, 1042815, 1042354, 1041626, 1044776, 1042512, 1045202, 1044918, 1041726, 1044925, 1044288, 1043444, 1043486, 1042307, 1042055, 1042400, 1045877, 1042993, 1044330, 1045214, 1043898, 1046910, 1045159, 1042335, 1043723, 1041972, 1043356, 1045113, 1045260, 1046235, 1044327, 1045263, 1044366, 1046544, 1045513, 1041702, 1044224, 1044984, 1045921, 1041946, 1043228, 1043542, 1043403, 1044500, 1041658, 1043501, 1044838, 1044874, 1044837, 1042415, 1043931, 1044835, 1043605, 1041790, 1045889, 1041607, 1043023, 1045133, 1046075, 1044553, 1044555 | 459 | 405 | 3273 | 67 | 9.1 | 0.09 | 0.96 | 1.04575749 |
GOTERM_MF_DIRECT | GO:0043022 ribosome binding | 1046554, 1045850, 1045770 | 459 | 4 | 3273 | 3 | 0.4 | 0.097 | 0.95 | 1.01322827 |
GOTERM_MF_DIRECT | GO:0015418 quaternary-ammonium-compound-transporting ATPase activity | 1043981, 1043984, 1043435 | 459 | 4 | 3273 | 3 | 0.4 | 0.097 | 0.95 | 1.01322827 |
GOTERM_MF_DIRECT | GO:0004096 catalase activity | 1045143, 1043606, 1044248 | 459 | 4 | 3273 | 3 | 0.4 | 0.097 | 0.95 | 1.01322827 |