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Metadata | Values | ||||||||
Asset Title | Expression of glucose-transport systems in MG1655 and isogenic mutant strains in aerobic cultures | ||||||||
Uploader | Sonja Steinsiek | ||||||||
Uploader SEEK ID | |||||||||
Project | SUMO2 | ||||||||
ASSAY | https://seek.sysmo-db.org/assays | ||||||||
Assay SEEK ID | |||||||||
Assay Title | transcription analysis of glucose-transporters in transporter-deletion strains | ||||||||
Assay_type | |||||||||
Technology_type | RT-PCR | ||||||||
Description | Expression of glucose-transport systems in MG1655 and isogenic mutant strains in aerobic cultures | ||||||||
Experimentalist | Sonja Steinsiek | ||||||||
Date | 02.08.12 - 14.11.12 | ||||||||
SOP | SUMO Evans medium | SUMO chemostat conditions | SUMO mRNA isolation Epicentre | ||||||
Experimental_conditions | |||||||||
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Item | fold-change | ||||||||
Compound (if concentration) | mRNA | ||||||||
Unit | dimensionless | ||||||||
Start_value (optional) | |||||||||
End_value (optional) | |||||||||
SD (optional) | |||||||||
Comments | Samples were normalized to the reference genes recA, rpoD an atpA and to the expression level of the wild-type strain under the same conditions. | ||||||||
Relative quantification and error propagation were calculated eith the software program qBasePLUS (Biogazelle). | |||||||||
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Sample ID (internal) | Organism | NCBI_ID | Strain | Genotype | Phenotype | organism/cell part | aerobiosis | date | Chemstat ID | |
Multi1_so110802_batch | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-08-02T0:0:0+0000 | Multi 1 | ||
Multi1_so110802_conti | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-08-02T0:0:0+0000 | Multi 1 | ||
Multi1_so110809_batch | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 1 | ||
Multi1_so110809_conti | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 1 | ||
Multi2_so110809_batch | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 2 | ||
Multi2_so110809_conti | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 2 | ||
Multi6_so110809_batch | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 6 | ||
Multi6_so110809_conti | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 6 | ||
Multi3_so110816_batch | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 3 | ||
Multi3_so110816_conti | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 3 | ||
Multi4_so110816_batch | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 4 | ||
Multi4_so110816_conti | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 4 | ||
Multi1_so111011_batch | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 1 | ||
Multi1_so111011_conti | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 1 | ||
Multi2_so111011_batch | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 2 | ||
Multi2_so111011_conti | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 2 | ||
Multi3_so111114_batch | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 3 | ||
Multi3_so111114_conti | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 3 | ||
Multi4_so111114_batch | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 4 | ||
Multi4_so111114_conti | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 4 | ||
Multi3_so111121_batch | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 3 | ||
Multi3_so111121_conti | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 3 | ||
Multi4_so111121_batch | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 4 | ||
Multi4_so111121_conti | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 4 | ||
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Gene | aceA | aceA SE(CNRQ) | ackA | ackA SE(CNRQ) | acs | acs SE(CNRQ) | atpA | atpA SE(CNRQ) | crp | crp SE(CNRQ) | cyaA | cyaA SE(CNRQ) | galP | galP SE(CNRQ) | galR | galR SE(CNRQ) | galS | galS SE(CNRQ) | glk | glk SE(CNRQ) | lamB | lamB SE(CNRQ) | malE | malE SE(CNRQ) | malK | malK SE(CNRQ) | malT | manX | manX4 SE(CNRQ) | mglB | mglB SE(CNRQ) | mlc | mlc SE(CNRQ) | ompC | ompC SE(CNRQ) | ompF | ompF SE(CNRQ) | poxB | poxB SE(CNRQ) | ptsG | ptsG SE(CNRQ) | ptsH | ptsH SE(CNRQ) | recA | recA SE(CNRQ) | rpoD2 | rpoD2 SE(CNRQ) | |||
Values | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | ||
Unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | ||
MG1655 | 1 | 0.14343604767611537 | 1 | 0.09764598122042634 | 1 | 0.13582923925221865 | 1 | 0.08365869600961796 | 1 | 0.11964722043637549 | 1 | 0.12040767570140924 | 1 | 0.22471801856047124 | 1 | 0.15990129331562486 | 1 | 0.25460581370771623 | 1 | 0.1322220706946465 | 1 | 0.12647325097285528 | 1 | 0.16125097780045244 | 1 | 0.1732154266361001 | 1 | 0.11335662129347458 | 1 | 0.09502395936802462 | 1 | 0.12267526199482016 | 1 | 0.15172579707478995 | 1 | 0.12088300926932594 | 1 | 0.1223477149578965 | 1 | 0.12850899111931793 | 1 | 0.15803995943049487 | 1 | 0.1269407372233138 | 1 | 0.17947138668465118 | ||||
DmglBAC | 0.9350962570270728 | 0.17389716270947408 | 0.5540845941810038 | 0.045744047607221894 | 1.1724985723634191 | 0.17110986706976716 | 1.0872891558212223 | 0.09352250006356894 | 0.7862060328090305 | 0.11676907014833067 | 0.9637231765445463 | 0.10841444060758933 | 1.2763547775179054 | 0.23027845054584212 | 0.9545711879999937 | 0.13030266849452354 | 0.9950105439766628 | 0.2512186166611049 | 0.8845383493561018 | 0.09269153103452034 | 0.7898029926724779 | 0.12058069899683653 | 0.9371267519618547 | 0.1259363285896784 | 1.0809238517673303 | 0.2745742417671411 | 1.1107085295531198 | 0.13051394316761458 | 0.65 | 0.195 | 0.0010875238553656702 | 1.3983101249557712E-4 | 1.5180177224813909 | 0.26729357032246526 | 0.8209930163950269 | 0.11826523997192237 | 0.8687331825559739 | 0.11696442241271052 | NaN | NaN | 1.2950227212994658 | 0.13436101474633677 | 0.9600074967203478 | 0.151164226215682 | 0.7802173438181323 | 0.09299918666759685 | 1.1787978720698817 | 0.2415832292842914 | ||
DgalP | 1.2942750857167111 | 0.1838751667962808 | 1.0750509175756289 | 0.0894842522136469 | 1.4337439625796995 | 0.2330438316723629 | 1.070755987705565 | 0.14924256403138392 | 1.3231445062676659 | 0.13358342418981276 | 1.2119108983937685 | 0.13252863497433703 | 4.0523119462747715E-4 | 9.254472798593976E-5 | 1.1338608443674165 | 0.25572547795663386 | 1.2714045467597028 | 0.2506932340457438 | 0.9290696462002302 | 0.14815195197696313 | 0.7297923963949516 | 0.14572953719712733 | 1.0358240047348122 | 0.12963103705601842 | 0.9779732649220041 | 0.08610895711336577 | 1.0150131350589984 | 0.16121961140030341 | 1.1161323199761428 | 0.12259929197407535 | 1.2599265721388195 | 0.20389957008151824 | 1.1620899343373432 | 0.21281229245268754 | 1.2125751476478135 | 0.14916520873685912 | 1.2886044826113603 | 0.11325307775310668 | 1.2913623674260337 | 0.3048396034297198 | 1.0136175082458312 | 0.19705484372767562 | 0.8762727553643022 | 0.1419230626703686 | 1.0657864127283 | 0.19342430661404472 | ||||
DmglBAC-DgalP | 1.7782896160061366 | 0.23345856719564909 | 1.0785441479857742 | 0.09292250553719832 | 2.697152934832438 | 0.7529586353846766 | 0.9700055445865366 | 0.10161403833503406 | 1.2929282402805247 | 0.15461807998619334 | 0.9910613018173887 | 0.1582566669391063 | 5.874070942296913E-4 | 9.952134228938173E-5 | 1.218375871633081 | 0.14029750631649898 | 1.8523304979251496 | 0.35164319061162885 | 0.8590469875081054 | 0.12424350403592323 | 0.8104292221010848 | 0.139530209195061 | 1.4791542569956226 | 0.20113911654450942 | 0.9945012948040428 | 0.19398624678300472 | 1.2739978545147181 | 0.25113632148859416 | 0.8911062406701554 | 0.11007203929508855 | 0.0010624879388239602 | 2.3085852663145E-4 | 1.5723098077709503 | 0.186005312574919 | 1.282138525474663 | 0.2003414042626321 | 1.3738305385023581 | 0.16487379157000717 | NaN | NaN | 1.2487587820080333 | 0.15357688425396515 | 1.3304257918789606 | 0.2511646094510287 | 0.8446762068121422 | 0.13611733912924143 | 1.2204936446851857 | 0.23945886973516778 | ||
DmalEFG | 1.2471495031602573 | 0.17014829634183165 | 0.6401949949546082 | 0.05422120895443228 | 1.518754273349775 | 0.20712447609285914 | 1.0256425832625453 | 0.14481085177236847 | 0.963426254553861 | 0.1140256967050538 | 1.230738239020046 | 0.12367842913672364 | 1.0428499607634818 | 0.29417229955017876 | 1.5372274260824759 | 0.24549338355572442 | 1.2171186889430776 | 0.30246009156843895 | 1.1374394217551322 | 0.12001465759361725 | 1.4524106441775853 | 0.13411172010438877 | 0.002144239986336041 | 6.709714372825803E-4 | 2.7444885032366133 | 0.42843022157153643 | 1.1205211327139397 | 0.10165527126625384 | 0.7098005714047582 | 0.0660666979520398 | 1.1609971672581545 | 0.14123011736952812 | 1.5497479228098272 | 0.32815543654999957 | 0.9513628829674583 | 0.09801714351388588 | 0.9835455026110839 | 0.08601798602782001 | 1.2236319840458203 | 0.19595704077308262 | 1.1874435675905555 | 0.20745588120167044 | 0.8512288974291474 | 0.11161932677903381 | 1.1454011044889916 | 0.24136129987269245 | ||||
DmanXYZ | 1.4857760842884058 | 0.21725824920653908 | 0.6615012671921612 | 0.31422450853368383 | 1.525027648938736 | 0.14355417902111162 | 1.046054399611146 | 0.13777391185742788 | 1.2019910626711452 | 0.13526947532555372 | 1.325718557058615 | 0.13794338099797768 | 1.1982037225122406 | 0.26501796124745897 | 1.4783397644741147 | 0.326526018603554 | 1.5824970010834607 | 0.2877500850831683 | 1.1731302186208712 | 0.13460020110525237 | 0.960884399116489 | 0.1418844813744858 | 1.509442457953839 | 0.16067172275795324 | 1.6388375084765339 | 0.18652259230114426 | 1.2588499240201705 | 0.21575910010755625 | 0.001340513568045738 | 2.817456068485679E-4 | 1.4173589405893305 | 0.27423188132977017 | 1.5353257022612041 | 0.2095344055360354 | 1.3491338397400041 | 0.11316310332376715 | 1.3813708824404751 | 0.1378186830547087 | 1.5153260629241947 | 0.24172718898056167 | 1.5855672294178305 | 0.3369202775653625 | 0.8247874999398128 | 0.11789680027925775 | 1.1590539709398529 | 0.22580683066520654 | ||||
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