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metadata
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Metadata | Values | ||||||||
Asset Title | Expression of glucose-transport systems in MG1655 and isogenic mutant strains in aerobic cultures | ||||||||
Uploader | Sonja Steinsiek | ||||||||
Uploader SEEK ID | |||||||||
Project | SUMO2 | ||||||||
ASSAY | https://seek.sysmo-db.org/assays | ||||||||
Assay SEEK ID | |||||||||
Assay Title | transcription analysis of glucose-transporters in transporter-deletion strains | ||||||||
Assay_type | |||||||||
Technology_type | RT-PCR | ||||||||
Description | Expression of glucose-transport systems in MG1655 and isogenic mutant strains in aerobic cultures | ||||||||
Experimentalist | Sonja Steinsiek | ||||||||
Date | 02.08.12 - 14.11.12 | ||||||||
SOP | SUMO Evans medium | SUMO chemostat conditions | SUMO mRNA isolation Epicentre | ||||||
Experimental_conditions | |||||||||
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Item | fold-change | ||||||||
Compound (if concentration) | mRNA | ||||||||
Unit | dimensionless | ||||||||
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SD (optional) | |||||||||
Comments | Samples were normalized to the reference genes recA, rpoD an atpA and to the expression level of the wild-type strain under the same conditions. | ||||||||
Relative quantification and error propagation were calculated eith the software program qBasePLUS (Biogazelle). | |||||||||
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Sample ID (internal) | Organism | NCBI_ID | Strain | Genotype | Phenotype | organism/cell part | aerobiosis | date | Chemstat ID | |
Multi1_so110802_batch | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-08-02T0:0:0+0000 | Multi 1 | ||
Multi1_so110802_conti | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-08-02T0:0:0+0000 | Multi 1 | ||
Multi1_so110809_batch | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 1 | ||
Multi1_so110809_conti | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 1 | ||
Multi2_so110809_batch | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 2 | ||
Multi2_so110809_conti | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 2 | ||
Multi6_so110809_batch | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 6 | ||
Multi6_so110809_conti | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-08-09T0:0:0+0000 | Multi 6 | ||
Multi3_so110816_batch | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 3 | ||
Multi3_so110816_conti | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 3 | ||
Multi4_so110816_batch | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 4 | ||
Multi4_so110816_conti | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-08-16T0:0:0+0000 | Multi 4 | ||
Multi1_so111011_batch | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 1 | ||
Multi1_so111011_conti | E.coli | 511145 | MG1655 | DmalEFG | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 1 | ||
Multi2_so111011_batch | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 2 | ||
Multi2_so111011_conti | E.coli | 511145 | MG1655 | DmanXYZ | whole cell | aerobic | 2011-10-11T0:0:0+0000 | Multi 2 | ||
Multi3_so111114_batch | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 3 | ||
Multi3_so111114_conti | E.coli | 511145 | MG1655 | DmglBAC | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 3 | ||
Multi4_so111114_batch | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 4 | ||
Multi4_so111114_conti | E.coli | 511145 | MG1655 | DmglBAC-DgalP | whole cell | aerobic | 2011-11-14T0:0:0+0000 | Multi 4 | ||
Multi3_so111121_batch | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 3 | ||
Multi3_so111121_conti | E.coli | 511145 | MG1655 | wild-type | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 3 | ||
Multi4_so111121_batch | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 4 | ||
Multi4_so111121_conti | E.coli | 511145 | MG1655 | DgalP | whole cell | aerobic | 2011-11-21T0:0:0+0000 | Multi 4 | ||
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Gene | aceA | aceA SE(CNRQ) | ackA | ackA SE(CNRQ) | acs | acs SE(CNRQ) | atpA | atpA SE(CNRQ) | crp | crp SE(CNRQ) | cyaA | cyaA SE(CNRQ) | galP | galP SE(CNRQ) | galR | galR SE(CNRQ) | galS | galS SE(CNRQ) | glk | glk SE(CNRQ) | lamB | lamB SE(CNRQ) | malE | malE SE(CNRQ) | malK | malK SE(CNRQ) | malT | manX | manX4 SE(CNRQ) | mglB | mglB SE(CNRQ) | mlc | mlc SE(CNRQ) | ompC | ompC SE(CNRQ) | ompF | ompF SE(CNRQ) | poxB | poxB SE(CNRQ) | ptsG | ptsG SE(CNRQ) | ptsH | ptsH SE(CNRQ) | recA | recA SE(CNRQ) | rpoD2 | rpoD2 SE(CNRQ) | |
Values | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV | value | STDEV |
Unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit | relative unit |
MG1655 | 1 | 0.11110466269047849 | 1 | 0.11800023384580519 | 1 | 0.18903217160838032 | 1 | 0.1664453755655326 | 1 | 0.12876172209768313 | 1 | 0.23236357546226377 | 1 | 0.24376670655727448 | 1 | 0.19191520768644965 | 1 | 0.11410586970333556 | 1 | 0.18284676440943287 | 1 | 0.15823475806985948 | 1 | 0.1766218293386227 | 1 | 0.11147857024092192 | 1 | 0.11546120785309491 | 1 | 0.11505293957781706 | 1 | 0.15954385834558715 | 1 | 0.11985725525460211 | 1 | 0.11376094056443058 | 1 | 0.1159121346626773 | 1 | 0.1251065544750719 | 1 | 0.23997181018869754 | 1 | 0.11607177471870522 | 1 | 0.14681715887745905 | 1 | 0.30243055567435245 |
DmglBAC | 0.8822654036291281 | 0.19987158079612297 | 0.7976429408839008 | 0.14909472397126575 | 0.6173599121376722 | 0.1619987597621829 | 1.0002935133497928 | 0.10990734053405388 | 0.9394733437131355 | 0.09105114719565441 | 0.9905271938129283 | 0.23064349635563383 | 1.0498454099534171 | 0.1383471154063359 | 1.1652372756335654 | 0.26531025539946795 | 0.7773483568614722 | 0.10062782353289464 | 0.6387372835685113 | 0.10430049534886185 | 0.6237390828614543 | 0.09846219275294121 | 0.9884888824556266 | 0.10277062148287001 | 0.6293947667906105 | 0.06902045813375082 | 0.9833490516647019 | 0.09366504724664951 | 0.7823974292689533 | 0.08252552347734667 | 1.0179456649065463E-4 | 1.2862575559643667E-5 | 1.2555685265046561 | 0.1213778509646357 | 0.9467189424703322 | 0.11707444986418972 | 0.9785917245613951 | 0.12256707284221964 | 0.6501422714284102 | 0.1168185504365594 | 1.0499819375036643 | 0.11307515511784998 | 0.7569624282793012 | 0.09449377843446015 | 0.8720189188429931 | 0.11468147079173227 | 1.146427618911571 | 0.2696744246575386 |
DgalP | 1.2001909217949067 | 0.12121998430473628 | 1.0018045288375153 | 0.0936887692814837 | 1.3372596164259294 | 0.15786187204646607 | 0.9471465261234686 | 0.16405044340367567 | 0.89081006912228 | 0.15501907653293384 | 1.3625963660163103 | 0.2885778757455791 | 0.005390521738615716 | 9.598643748880881E-4 | 1.2028127836425218 | 0.16010022631407422 | 1.159252558464944 | 0.1786094086756928 | 0.881130297101857 | 0.1333192825974092 | 0.8178012294026532 | 0.08913679139835841 | 0.992522763540787 | 0.09965114348831934 | 0.9784911575642466 | 0.258252031753964 | 0.8733234284142426 | 0.11478299325052997 | 0.7788269068259185 | 0.13590283203966994 | 1.0779115282561653 | 0.08539631949434642 | 0.8463726988546364 | 0.10132259189470613 | 1.0748414878003982 | 0.10161406860567423 | 1.2988109792047635 | 0.2031099098119651 | 0.5353285328980681 | 0.051357193538852694 | 0.8628088287088326 | 0.1256717230230296 | 0.9330210988612724 | 0.14229392136909214 | 0.9950825645404292 | 0.08967990326025546 | 1.061020347338566 | 0.20045064920517022 |
DmglBAC-DgalP | 1.6210043944149044 | 0.04391778261732567 | 1.3280707034456702 | 0.05261139805238626 | 0.9486999272694295 | 0.04447851450320409 | 1.161310685890589 | 0.03316036320691077 | 1.8444337728550344 | 0.11817575052592327 | 1.127955940973313 | 0.033336008572736296 | 0.008426613016963968 | 0.0013248349985691343 | 1.4907727343913442 | 0.041450028031441724 | 1.9506458594156486 | 0.19945383477216289 | 1.0582329929257526 | 0.031781393440738416 | 0.6869404145594985 | 0.020076506290697994 | 1.4046855706899086 | 0.03796799205961616 | 1.1253892597870017 | 0.09061126243378596 | 1.439373315535472 | 0.062059895351012515 | 1.0912848739435468 | 0.029524595852866795 | 2.5526711987693373E-4 | 1.7971384010530237E-5 | 2.3420467134792142 | 0.1387850106686973 | 1.4657832021931974 | 0.05685668796354944 | 2.2547229739411927 | 0.0933577397298206 | 0.8970997369078865 | 0.037433288943737104 | 1.1536824448950096 | 0.09097427597447966 | 1.5378753317730787 | 0.03199797265867139 | 0.7250426949709178 | 0.038948595128544275 | 1.1876486966946096 | 0.04590381129676631 |
DmalEFG | 1.0832020200050985 | 0.08670830651141002 | 0.867292872583933 | 0.10088685693103276 | 0.9257216624313263 | 0.08759163978924792 | 0.9002970033017276 | 0.0890437629398006 | 0.9109733037296025 | 0.13728342749236047 | 1.3425675617726136 | 0.22235188460516075 | 1.1970839727745726 | 0.11114098185834101 | 1.6402552081080175 | 0.15426208708782396 | 0.8301644506747909 | 0.12023983282204961 | 0.9137290802048835 | 0.09185787286230887 | 3.6874646042942625 | 0.34967014622613607 | 9.024554440076329E-4 | 1.4801253067012453E-4 | 4.960043489651216 | 0.9349104715269909 | 0.7904270709350294 | 0.09530535839432676 | 0.9437273087856342 | 0.14507348793756755 | 1.0514886245763564 | 0.11155940450679654 | 1.2037910363328026 | 0.1790183003731605 | 0.7752685419517568 | 0.12006909695937126 | 1.0336950072433841 | 0.19470385457249395 | 0.5559947665364942 | 0.04344803671392027 | 1.2686664822299556 | 0.10476010714611507 | 1.022629162667576 | 0.2276245271505811 | 1.0045621573597516 | 0.10839253704705291 | 1.105700183102988 | 0.251785338970889 |
DmanXYZ | 1.534052645060703 | 0.18362638213136553 | 0.8296957509578079 | 0.1690878325046013 | 0.7506838427753011 | 0.19860975475184428 | 0.9871616016291014 | 0.1807153527173117 | 0.9716183909521742 | 0.13607917059129887 | 1.0012609302947773 | 0.1621381916322109 | 1.1614955946624033 | 0.16182518375186158 | 1.3236802762979498 | 0.26728639572249396 | 1.095949780734319 | 0.13007937252936583 | 1.1856900236804795 | 0.20935739090356997 | 0.1384499794251211 | 0.14071018836993673 | 1.4807714129289895 | 0.184139789190333 | 1.4864676725457833 | 0.2590902316554914 | 1.1819032226385993 | 0.14333838577659003 | 7.670783937531392E-4 | 1.685989408807467E-4 | 0.8602878714375656 | 0.13808541483076994 | 1.19692198510502 | 0.13990317009644437 | 0.8984846962363734 | 0.1193936633653727 | 1.2186505224122508 | 0.18341215831563976 | 0.777177785201945 | 0.1159411122901587 | 1.4740345124513956 | 0.18403367946433413 | 1.0525878556819754 | 0.1272616816519632 | 0.8688761860425905 | 0.14553753345940085 | 1.1658799984611852 | 0.3678124696190267 |