Projects: COMBINE Multicellular Modelling
Institutions: University College London (UCL)

Disciplines: Modeller
Roles: Not specified
Expertise: Dynamic modelling, Databases, Mathematical modelling, standards, Neuroscience, NeuroML
Projects: DigiSal, GenoSysFat, SAFE-Aqua
Institutions: Wageningen University & Research

Disciplines: Bioinformatician
Roles: PhD Student
Expertise: semantics, Software Engineering, R, Python, Java, Data Management, Databases, Genetics, Genomics, Microbiology
Tools: Not specified
Projects: EmPowerPutida
Institutions: LifeGlimmer GmbH
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Data Management, Databases, Bioinformatics, Python, Java, Data integration, Molecular Biology
Tools: Data Management
Computational Biologist
Projects: MycoSynVac - Engineering Mycoplasma pneumoniae as a broad-spectrum animal vaccine, WURSynBio
Institutions: Wageningen University & Research

Disciplines: Bioinformatician, Modeller
Roles: PhD Student
Expertise: Molecular Biology, Dynamic modelling, Python, Java, R, pathogen host interaction, Bioinformatics, Systems Biology, Agent-based modelling
Tools: Copasi, libRoadrunner, Python, R, semantic web
I am a researcher (PhD student) working at Wageningen University & Research as bioinformatician and modeller. I am working as part of the MycoSynVac (http://www.mycosynvac.eu/) project on dynamic modelling of central carbon metabolism in M. pneumoniae, to be extended to full dynamic modelling of metabolism to be implemented in a whole cell model.
I am also looking into possibilities to improve standards in model generation using semantic technologies, improving automatic generation, annotation
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Projects: HUMET Startup
Institutions: Centro de Investigación Príncipe Felipe

Disciplines: Bioinformatician, Modeller
Roles: Not specified
Expertise: Bioinformatics, Data Management, Data integration, Mathematical modelling, Genomics, Genetics, Transcriptomics, Systems Biology, Microarray analysis
Tools: Bioinformatics, Computational and theoretical biology, Computational Systems Biology, Data Management, Databases, Dynamic modelling, Genetics, Genomics, R, Systems Biology, Transcriptomics, Java
My scientific interests revolve around functional genomics, systems biology and the development of algorithms and software for the analysis of high-throughput data (mainly, but not restricted to, Next Generation Sequencing) and its application to the relationship between genotype and phenotype, mainly oriented to personalized and precision medicine. I am especially interested in the study of disease mechanisms and drug action mechanisms, drug repositioning and the definition of mechanism-based
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Projects: SulfoSys - Biotec
Institutions: University Bielefeld
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Metabolomics, Databases, Transcriptomics, Proteomics, Bioinformatics, Data Management, Data integration
Tools: Bioinformatics, Data Management, Databases, R, Java
Projects: Kinetics on the move - Workshop 2016, CausalDB, COMBINE Multicellular Modelling, Colosys, NTNU Health Druglogics
Institutions: Kinetics on the move Workshop at HITS, Norwegian University of Science and Technology

Disciplines: Bioinformatician
Roles: Not specified
Expertise: Bioinformatics, Systems Biology, SBGN standard
Projects: ZucAt
Institutions: Institute of Cytology and Genetics
Disciplines: Modeller
Roles: Not specified
Expertise: Systems Biology, molecular genetic systems, gene networks, gene expression, modeling
Tools: Java, Vaadin, kinetic modeling
I am staff scientist in the lab of molecular-genetic systems at the Department of Systems Biology, Institute of Cytology and Genetics SB RAS and Postdoc Research Fellow at San Diego State University.
My research focus is dynamical modeling of gene network functioining.
Projects: FAIRDOM
Institutions: ETH Zurich & Basel / The Scientific IT Services (SIS) division
Disciplines: Not specified
Roles: Not specified
Expertise: Software Engineering, Scientific Computing, Databases, distributed systems
Tools: High Performance Computing, Statistics, SQL, Java, Python
Head of Scientific IT Services and member of the ITS executive board at ETH Zurich.
Project manager of SyBIT.
Project partner of the FAIRDOM Initiative.
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: University of Tokyo
Disciplines: Modeller, Experimentalist, Bioinformatician
Roles: Postdoc
Expertise: Genetic interaction, Cell biology, Image analysis, Phenome, Genetics, Genomics
Tools: Model selection, Fluorescence microscopy, CalMorph, R, Java, GLM
I am a postdoc in The University of Tokyo. My research interest is to know structure of biological systems by functional relationships between genes working in response to endogenous and/or exogenous disruptions. I'm trying to find functional relationships between genes by similarity of phenotype defined with high-dimensional morphological features in yeast gene deletion collection. I'm happy if you will talk with me in any topics.
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Institute of Cytology and Genetics
Disciplines: Modeller
Roles: Not specified
Expertise: Mathematical modelling, Software Engineering, Systems Biology
Tools: Computational and theoretical biology, Computational Systems Biology, Data Management, Java, ODE, Stochastic models, Scilab, Individual-based models
I am a biomodeler, PhD student. Actually, I've graduated from Novosibirsk State University on two specialities: my bachelor diploma is done in computer science and the master thesis is defended in information biology. So, I'm kind of drifting towards biology. I am a part of the Haploid Evolutionary Constructor project. Our research group studies are dedicated to the simulation of prokaryotic communities. Personally, I am involved into the simulation of spatially distributed bacterial communities
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Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: Universität Konstanz
Disciplines: Experimentalist, Modeller
Roles: PhD Student
Expertise: Molecular Biology, Systems Biology, Mathematical modelling
Tools: quantitative western blot analysis, Molecular Biology, Java, octave, R, ODE
I studied Life Science (which is similar to chemical biology) at the University of Konstanz and became interested in Bioinformatics, Systems Biology and quantitative analyses during my Master's. In my PhD project I combine experimental analyses with modeling and parameter estimation approaches to quantitatively analyse regulation of apoptosis at the level of the Bcl-2 protein family.
Projects: ICYSB 2015 - International Practical Course in Systems Biology
Institutions: University of Tübingen
Disciplines: Bioinformatician
Roles: Not specified
Expertise: Bioinformatics, Software Engineering, Epigenomics, Biomolecular Computing, NGS analysis
Trained as a Computer Scientist at the University of Jena, Germany, my interests drifted more and more towards "computing life" during my PhD at Simon Fraser University and the University of British Columbia, Canada. On one hand, that term captures that I got fascinated by the idea to understand life as a form of computation and to describe, reprogram, and reassemble parts of cells as described in many brilliant experiments from a spectrum of disciplines ranging from DNA computing to Synthetic
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Projects: SysMetEx, Kinetics on the move - Workshop 2016
Institutions: Università della Svizzera Italiana
Disciplines: Modeller
Roles: Not specified
Expertise: ODE modelling of biological interaction network, Bioinformatics
Tools: Python, c++, Java, bash, standard bioinformatic tools
Projects: de.NBI-SysBio, Kinetics on the move - Workshop 2016, Example use cases
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH), University of Rostock
Disciplines: Not specified
Roles: Not specified
Expertise: Data Management, Databases
Tools: MySQL, Java, graphdatabase, Neo4J
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, Kinetics on the move - Workshop 2016
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Disciplines: Not specified
Roles: Not specified
Expertise: Databases, Software Engineering, Data Management
Tools: Ruby on Rails, MySQL, HTML, Ruby, Java, Javascript
Software developer for FAIRDOM
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, GenoSysFat, DigiSal, FAIRDOM user meeting
Institutions: School of Computer Science, University of Manchester, Manchester Centre for Integrative Systems Biology, University of Manchester

Disciplines: Not specified
Roles: Not specified
Expertise: Agile development, Cloud computing, REST, Software Architecture, Data Management, Software Engineering
Tools: Docker, AWS, Research Objects, semantic web, J2EE, linux, Taverna, Ruby, Ruby on Rails, Workflows, Web services, Java, Databases
Software Engineer and Architect working within the FAIRDOM team.
Leading the development of SEEK and RightField.
Projects: SysMO DB, FAIRDOM, ICYSB 2015 - International Practical Course in Systems Biology, de.NBI-SysBio, Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III), Early Metabolic Injury (LiSyM-EMI - Pillar I), Chronic Liver Disease Progression (LiSyM-DP - Pillar II), LiSyM Core Infrastructure and Management (LiSyM-PD), Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV), Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM), Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF), Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP), The Hedgehog Signalling Pathway (LiSyM-JGMMS), Kinetics on the move - Workshop 2016, Example use cases, SBEpo - Systems Biology of Erythropoietin, FAIRDOM & LiSyM & de.NBI Data Structuring Training, MESI-STRAT, INCOME
Institutions: Heidelberg Institute for Theoretical Studies (HITS gGmbH)

Disciplines: Bioinformatician
Roles: Not specified
Expertise: Human-Computer Interaction, distributed systems, Information Retrieval, Software Engineering
Tools: Python, seek, SABIO-RK database, Ruby on Rails, Javascript, Grails web development framework, Spring, Java, Databases, Data Management
I am group leader of the SDBV (Scientific Databases and Visualisation) group at the HITS gGmbH, the Heidelberg Institute for Theoretical Studies.
I am interested in finding data. Starting with my master's thesis I have always worked on how to store data in a way that you can find it, and how to make sense out of data that has been stored.
Within FAIRDOM I find interesting to help people to store their data in a way that they make sense even after years.
Projects: SUMO
Institutions: University of Sheffield
Disciplines: Not specified
Roles: Postdoc
Expertise: Microarray Data Analysis, Agent-based modelling, Bioinformatics
Tools: Bioconductor Packages in R, Taverna, Java, Copasi
I am a research associate in the department of computer science at the University of Sheffield since January 2008. My research is primarily involved with using agent-based modelling techniques and mathematical modelling techniques to model Escherichia coli K-12 Respiratory Adaptation. My research interests also include, development of workflows to analyze Microarray Data.
Projects: COSMIC
Institutions: University of Goettingen
Disciplines: Not specified
Roles: Not specified
Expertise: Clostridium, Microarray printing, Microarray experiments with prokaryotes, Database design, Chemostats, HPLC, Anaerobic Microbiology, Programming, Molecular Biology, Microbiology
Tools: Groovy, HPLC, Molecular biology techniques (RNA/DNA/Protein), qRT-PCR, Microarray analysis, Fermentation, Java, Microbiology
I have a permanent position at the department of microbiology at the TU-München. As a microbiologist I am interested in the regulation of central metabolism in prokaryotic organisms with different types of energy metabolism such as Clostridia, Bacilli and acetic acid bacteria. Furthermore I worked as a software developer for several years in a bioinformatics company and I am very interested in bioinformatics and handling of large amounts of data.
Projects: SysMO DB
Institutions: Manchester Centre for Integrative Systems Biology, University of Manchester
Disciplines: Modeller
Roles: Not specified
Expertise: Glycolysis, Limit cycle oscillations
Tools: Mathematica, Java