Standard growth conditions and standard 'wild-type' Arabidopsis accession, with biomass data for whole rosettes, and in some cases, individual leaf area and leaf biomass data
SEEK ID: https://fairdomhub.org/studies/400
Projects: Millar group
Experimentalists: Benedicte Wenden, Yin Hoon Chew
Created: 22nd Aug 2018 at 12:35
Last updated: 22nd Aug 2018 at 13:14
Projects: Millar group, TiMet, PHYTOCAL: Phytochrome Control of Resource Allocation and Growth in Arabidopsis and in Brassicaceae crops, POP - the Parameter Optimisation Problem, Regulation of flowering time pathways in Arabidopsis on the summer Solstice., PlaSMo model repository
Institutions: University of Edinburghhttps://orcid.org/0000-0003-1756-3654
Data, models and simulations for the Chew et al. 2014 paper (PNAS, https://doi.org/10.1073/pnas.1410238111), using wild-type Arabidopsis ecotype Col-0 in standard 12hL:12hD growth conditions, compared to La(er) or Fei-0 accessions, or to plants overexpressing a micro RNA (miR156).
Snapshots: No snapshots
Studies: Construction of Framework Model v1, Test of FMv1, growth study of Col-0 accession in 12L:12D, Test of FMv1, growth study of Col-0 accession in 5 photoperiods, Test of FMv1, growth study of other accessions and transgenic line in 12...
Assays: Arabidopsis Framework Model v1, Matlab and Simile version, Gas exchange of Fei-0 and Ler plants in 12hL:12hD, Growth of Col-0 and 35S:miR156 plants in 12hL:12hD, Growth of Col-0 in 12hL:12hD, Growth of Col-0 plants in 5 photoperiods, Growth of Fei-0 and Ler plants in 12hL:12hD
Data for Figure 2I-2K in Chew et al. PNAS 2014.
Experimental conditions: ∼21.3 °C; 12:12-h light/dark cycle; light intensity, 110 μmol·m−2·s−1;mean daytime CO2 level, 375 ppm. The error bars show the SEs of five plants
Further detail on the experimental conditions is contained in the public record on the BioDare resource, link to follow
Contributor: Andrew Millar
Assay type: Cultivation Experiment
Technology type: Cultivation experiment
Snapshots: No snapshots
Investigation: Arabidopsis Framework Model v1, predicting rose...
SOPs: No SOPs
Data for Figs. 2I, 2J, 2K in Chew et al. PNAS 2014
Fresh biomass, dry biomass (i.e. after baking out all water),
SLA - specific leaf area (area per g)
The same data are available on the BioDare resource, with additional experimental meta data on growth conditions.
BioDare ID 13790828881028, title "Physiology experiment using Col", the direct link is:
Investigations: Arabidopsis Framework Model v1, predicting rose...
Assays: Growth of Col-0 in 12hL:12hD