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Programme
de.NBI Systems Biology Service Center (de.NBI-SysBio)40
Disease Maps10
Independent Projects8
FAIRDOM7
German Association for Medical Informatics, Biometry and Epidemiology (GMDS)7
SysMO6
LiSyM - Systems Medicine of the Liver6
COMBINE (Computational Modeling in Biology Network)6
FAIR Biocatalysis4
e:Bio3
ERASysAPP3
nfdi4health - German National Research Data Infrastructure for Personal Health Data3
Drug development for neglected parasitic diseases3
e:med2
MS_DILI2
Era CoBioTech2
ERNEST - European Research Network on Signal Transduction2
EU Projects2
The Digital Salmon1
NIBSys1
Model repository for M4 (Make Me My Model) clients of ISBE1
Druglogics1
BlueBio ERA-NET COFUND1
Cancer drug discovery preclinical research1
DFG founded projects1
COST ACTION CA21111 - OneHealthdrugs (One Health drugs against parasitic vector borne diseases in Europe and beyond) 1
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Project
Kinetics on the move - Workshop 201640
COVID-19 Disease Map10
de.NBI-SysBio9
Example use cases9
GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"7
FAIRDOM6
FAIRDOM & LiSyM & de.NBI Data Structuring Training6
SDBV/HITS6
COMBINE Multicellular Modelling5
SysMO-LAB4
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)4
EnzymeML4
FAIRDOM Community Workers4
SysMO DB3
ICYSB 2015 - International Practical Course in Systems Biology3
Early Metabolic Injury (LiSyM-EMI - Pillar I)3
Chronic Liver Disease Progression (LiSyM-DP - Pillar II)3
Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)3
LiSyM Core Infrastructure and Management (LiSyM-PD)3
Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)3
Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)3
The Hedgehog Signalling Pathway (LiSyM-JGMMS)3
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)3
FAIRDOM user meeting3
SBEpo - Systems Biology of Erythropoietin3
MESI-STRAT3
COVID-19 related studies and tools in Germany3
nfdi4health - German National Research Data Infrastructure for Personal Health Data3
NMTrypI - New Medicines for Trypanosomatidic Infections3
ModeleXchange initiative3
SABIO-VIS3
MS_DILI2
INCOME2
BESTER2
PoLiMeR - Polymers in the Liver: Metabolism and Regulation2
OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation2
MIX-UP2
ERNEST Mapping Group Pilot Study2
SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation2
CoVIDD - Coronavirus interactions in drug discovery - optimization and implementation2
SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke2
CC-TOP2
BioCreative VII2
MESI-STRAT Review2
MESI-Review 20242
SysMetEx1
iRhythmics1
SYSTERACT1
GenoSysFat1
ZucAt1
ErasysApp Funders1
Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)1
CausalDB1
Colosys1
EraCoBiotech 2 nd call proposal preparation1
Sustainable co-production1
Multiscale modelling of state transitions in the host-microbiome-brain network1
NTNU Health Druglogics1
HOTSOLUTE1
TRALAMINOL1
Extremophiles metabolsim1
INDIE - Biotechnological production of sustainable indole1
NAD COMPARTMENTATION1
SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers1
Stress granules1
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population1
AquaHealth (ERA-BlueBio)1
Standardization of enzyme-catalyzed reaction measurement1
Standardization of enzyme-catalyzed reaction modelling1
Modelling COVID-19 epidemics1
Mass spectrometry proteomics for biomarker discovery1
Thymidylate synthase dimer dissociation1
SDBV ephemeral data exchanges1
The BeeProject1
WG1 - Compound libraries coordination and integration of compound design1
WG2 - Integration of early phase studies and low environmental impact actions1
WG3 - Coordination of in vitro-to-in vivo translation of OneHealth leads and candidates1
WG4 - Integration of R&D process-environmental studies and translation in informed whitepaper1
WG5 - Promote dissemination1
WG6 - Promote the transfer of knowledge1
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Institution
Kinetics on the move Workshop at HITS22
Heidelberg Institute for Theoretical Studies (HITS gGmbH)11
University of Rostock4
Norwegian University of Science and Technology2
University of Heidelberg2
University of Edinburgh2
Luxembourg Centre for Systems Biomedicine (LCSB)2
Humboldt-Universität zu Berlin1
University of Erlangen-Nuernberg1
University of Greifswald1
German Cancer Research Center (DKFZ)1
Università della Svizzera Italiana1
Charité University Medicine Berlin1
Novosibirsk State University1
FAIRDOM User meeting1
Humboldt University Berlin1
University Medicine of Greifswald1
University of Innsbruck1
University of Eastern Finland (UEF)1
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Location
Germany38
United Kingdom2
Luxembourg2
Norway2
Austria1
Switzerland1
Finland1
Russian Federation1
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Expertise
Data Management8
Databases5
Biochemistry4
Bioinformatics4
Molecular Biology3
Systems Biology3
Curation3
Metabolic Networks3
Software Engineering2
Information Retrieval2
computational structural biology2
molecular modeling2
Kinetic modelling2
standards2
Scientific Computing2
Data Integration2
Microbiology1
Genetics1
Mathematical modelling1
Transcriptomics1
Computational Systems Biology1
Mathematical modelling of biological systems1
Mathematical modelling; Nonlinear Dynamics; Time Series Analysis; network theory1
Metabolic Engineering1
Signalling networks1
genome-scale modeling1
Biology1
model management1
Computational modelling1
Metabolic Models1
semantics1
Methode Development1
ODE modelling of biological interaction network1
Liver1
metabolic systems biology1
Phytopathology1
chemoinformatics1
drug design1
SBGN standard1
Calcium signalling1
learning1
memory1
cooperativity1
Human-Computer Interaction1
Data curation1
Medical informatics1
PBPK modeling1
Semantic Enrichment1
Provenance1
Ontology1
Computational Biology1
Data Modelling1
Distributed Systems1
Computer-aided drug design1
Physiological-based pharmacokinetics model1
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Tool
Databases7
Data Management5
Java5
Python4
SEEK4
SBML3
Copasi3
Ruby on Rails3
Neo4J3
Cytoscape2
Ontologies2
MySQL2
Computational Systems Biology2
Javascript2
SED-ML2
bash2
Data Science2
SABIO-RK2
Kinetic Modeling2
Cell and tissue culture1
ODE1
Workflows1
Matlab1
Chip-chip1
R1
Ruby1
Spring1
MIRIAM1
BioMart1
HTML1
Molecular Dynamics1
Grails web development framework1
Machine Learning1
SABIO-RK database1
RightField1
SBGN1
graphdatabase1
COBRA toolbox1
Protege1
c++1
standard bioinformatic tools1
Identifiability analysis1
web development1
SBGN-ED1
multi-state modelling1
MCell1
CellDesigner1
roadrunner1
tellurium1
jupyter notebooks1
Data Integration1
Parameter estimation1
Molecular docking and simulation1
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40
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