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Independent Projects37
FAIRDOM6
SysMO5
de.NBI Systems Biology Service Center (de.NBI-SysBio)3
e:Bio2
The Digital Salmon2
LiSyM - Systems Medicine of the Liver2
e:med2
German Association for Medical Informatics, Biometry and Epidemiology (GMDS)2
Disease Maps2
SARCHI: Mechanistic modelling of health and epidemiology1
ERASysAPP1
NIBSys1
Model repository for M4 (Make Me My Model) clients of ISBE1
MS_DILI1
COMBINE (Computational Modeling in Biology Network)1
Era CoBioTech1
Newcastle University Systems Modelling of Ageing1
BlueBio ERA-NET COFUND1
nfdi4health - German National Research Data Infrastructure for Personal Health Data1
Drug development for neglected parasitic diseases1
FAIR Biocatalysis1
DFG founded projects1
EU Projects1
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Project
ICYSB 2015 - International Practical Course in Systems Biology37
FAIRDOM6
SysMO DB5
FAIRDOM user meeting4
Kinetics on the move - Workshop 20163
MESI-STRAT3
GenoSysFat2
DigiSal2
Early Metabolic Injury (LiSyM-EMI - Pillar I)2
Chronic Liver Disease Progression (LiSyM-DP - Pillar II)2
Regeneration and Repair in Acute-on-Chronic Liver Failure (LiSyM-ACLF - Pillar III)2
LiSyM Core Infrastructure and Management (LiSyM-PD)2
Liver Function Diagnostics (LiSyM-LiFuDi - Pillar IV)2
Model Guided Pharmacotherapy In Chronic Liver Disease (LiSyM-MGP)2
Multi-Scale Models for Personalized Liver Function Tests (LiSyM-MM-PLF)2
The Hedgehog Signalling Pathway (LiSyM-JGMMS)2
Molecular Steatosis - Imaging & Modeling (LiSyM-MSIM)2
Example use cases2
FAIRDOM & LiSyM & de.NBI Data Structuring Training2
INCOME2
PoLiMeR - Polymers in the Liver: Metabolism and Regulation2
GMDS Project Group "FAIRe Dateninfrastrukturen für die Biomedizinische Informatik"2
FAIRDOM Community Workers2
COVID-19 Disease Map2
SNAPPER: Synergistic Neurotoxicology APP for Environmental Regulation2
BioCreative VII2
MESI-STRAT Review2
SDBV/HITS2
MESI-Review 20242
SysMO-LAB1
SulfoSys - Biotec1
Whole body modelling of glucose metabolism in malaria patients1
Manchester Institute for Biotechnology1
de.NBI-SysBio1
ZucAt1
ErasysApp Funders1
SBEpo - Systems Biology of Erythropoietin1
Service to URV Tarragona, Spain with respect to their Safety Assessment of Endocrine Disrupting Chemicals model (Active NOW)1
MS_DILI1
EraCoBiotech 2 nd call proposal preparation1
COMBINE Multicellular Modelling1
Sustainable co-production1
Multiscale modelling of state transitions in the host-microbiome-brain network1
BESTER1
HOTSOLUTE1
TRALAMINOL1
Extremophiles metabolsim1
Systems modelling age-related changes in the maintenance of dermal extra-cellular matrix: mechanisms and interventions1
INDIE - Biotechnological production of sustainable indole1
EnzymeML1
OLCIR: Optimization of Lung Cancer Therapy with Ionizing Radiation1
NAD COMPARTMENTATION1
SCyCode The Autotrophy-Heterotrophy Switch in Cyanobacteria: Coherent Decision-Making at Multiple Regulatory Layers1
Stress granules1
Mechanism based modeling viral disease ( COVID-19 ) dynamics in human population1
COVID-19 related studies and tools in Germany1
AquaHealth (ERA-BlueBio)1
nfdi4health - German National Research Data Infrastructure for Personal Health Data1
NMTrypI - New Medicines for Trypanosomatidic Infections1
ModeleXchange initiative1
Modelling COVID-19 epidemics1
SASKit: Senescence-Associated Systems diagnostics Kit for cancer and stroke1
CC-TOP1
SDBV ephemeral data exchanges1
The BeeProject1
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Institution
University of Gothenburg6
Heidelberg Institute for Theoretical Studies (HITS gGmbH)3
Manchester Centre for Integrative Systems Biology, University of Manchester3
Imperial College London2
Humboldt-Universität zu Berlin2
University of Manchester - Department of Computer Science2
ETH Zurich2
VU University Amsterdam1
Norwegian University of Science and Technology1
University of Goettingen1
University of Newcastle1
University of Rostock1
Otto-von-Guericke University Magdeburg1
University of Zürich1
University of Luxembourg1
Universität Konstanz1
Okayama University1
Buenos Aires1
University of Milano-Bicocca1
University of Tübingen1
Uni Basel1
Åbo Akademi University1
Institute of Cytology and Genetics1
Institute for Experimental Internal Medicine1
University of Tokyo1
Max-Planck Institute for Molecular Genetics1
Institut Curie1
Stockholm University1
Radboud University Nijmegen1
Institute of Pathology1
IFIBYNE - Physiology, Molecular Biology and Neurosciences1
FAIRDOM User meeting1
University of Innsbruck1
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Location
Germany12
Sweden7
United Kingdom6
Switzerland3
Argentina2
Japan2
Netherlands2
Austria1
Finland1
France1
Italy1
Luxembourg1
Norway1
Russian Federation1
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Expertise
Systems Biology7
Molecular Biology6
Software Engineering5
Mathematical modelling4
Data Management4
Cell biology4
Bioinformatics3
Transcriptomics3
Proteomics3
Image analysis3
Genetics2
Genomics2
Single Cell analysis2
Databases2
Image processing2
Genetic interaction2
Microbiology1
Biochemistry1
Metabolomics1
Escherichia coli1
Saccharomyces cerevisiae1
Information Retrieval1
dynamics of biological networks.1
Data analysis1
Metabolic Engineering1
Biophysics1
protein-protein interactions1
Cell physiology1
Signalling networks1
Regulatory Networks1
Software Architecture1
Stoichiometric modelling1
Biology1
REST1
network inference1
Kinetic modelling1
semantics1
stochastic modelling1
Epigenomics1
Biomolecular Computing1
NGS analysis1
High-throughput data analysis1
diabetes1
insulin signaling1
adiponectin1
Model selection1
Identifiability1
Cellular Senescence1
Cell Cycle1
Dynamic Systems1
Gastric cancer1
EGFR signalling1
apoptosis1
Phenome1
Organic Synthesis1
Prostate Cancer1
Bone Biomechanics1
Biomedical Engineering1
in vitro & ex vivo cell culture1
in vivo animal models1
Epigenetics1
Cloud computing1
Human-Computer Interaction1
Agile development1
Docker1
Curation1
Dynamics and Control of Biological Networks1
Data Integration1
Parameter estimation1
Ontology1
Metabolic Networks1
Data Modelling1
Distributed Systems1
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Tool
Java7
Matlab7
ODE5
Fluorescence and confocal microscopy5
Data Management3
Databases3
Python3
Ruby on Rails3
Computational Systems Biology3
Parameter estimation3
Copasi2
Microarray analysis2
R2
Ruby2
linux2
Stochastic models2
Dynamic modelling2
Javascript2
Model selection2
SEEK2
Microbiology1
Molecular Biology1
Biochemistry and protein analysis1
Cell and tissue culture1
Computational and theoretical biology1
Perl1
Workflows1
Web services1
Mathematica1
Chip-chip1
Mass spectrometry1
Taverna1
Spring1
J2EE1
quantitative western blot analyses1
quantitative western blot analysis1
MySQL1
including:
- Dynamic modelling
- Parameter estimation
- Optimal experimental design
- Dynamic optimization1
Deterministic models1
FACS1
sensitivity analysis1
BioMart1
HTML1
Fluorescence microscopy1
molecular biological techniques (RNA/DNA techniques)1
Molecular biology techniques (RNA/DNA/Protein)1
qRT-PCR1
Cell culture1
Grails web development framework1
SABIO-RK database1
semantic web1
RightField1
COBRA toolbox1
Protege1
c++1
bash1
Surface sensitive techniques1
octave1
Scilab1
Individual-based models1
Identifiability analysis1
protein analysis1
life-cell imaging1
CalMorph1
GLM1
Activity-based Protein Profiling1
pulse SILAC1
micro-Computed Tomography1
AWS1
Research Objects1
Docker1
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37
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