Assays

Organisms: No organisms

SOPs: No SOPs

Data files: HepG2_protein_cell_0mM_6mMGlc

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Cell counts and metbolites for HepG2 cells with...

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: HepG2 | cell counts and metabolite levels over ...

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)

SOPs: 003 Biomolecular Extractions from LAO (Qiagen A..., In solution digestion part, SOP - RNA-Prot sampling for bioleaching, Sample Identification Code

Data files: AAS_P Proteomics, ASS_P Proteomics, ASX_LSX_P Proteomics, LXX_P Proteomics, SAL_P Proteomics, SAX_P Proteomics, SXX_P Proteomics

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)

SOPs: DNA, RNA, Protein extraction from mineral samples, In solution digestion part, SOP - RNA-Prot sampling for bioleaching, Sample Identification Code

Data files: LXX_M Proteomics, SAL_M Proteomics, SLX_M Proteomics

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type) (chemostat)

SOPs: 003 Biomolecular Extractions from LAO (Qiagen A..., In solution digestion part, SOP - RNA/Protein sampling for continuous culture, Sample Identification Code

Data files: AXX_Cn Proteomics

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)

SOPs: SOP_Bioleaching_in_flasks_UDE

Data files: Biofilm Imaging

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)

SOPs: 003 Biomolecular Extractions from LAO (Qiagen A..., SOP - RNA/Protein sampling for continuous culture, Sample Identification Code

Data files: Rawdata RNAseq

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Supplemental File 1 - maxquant parameters, Supplemental File 2 - qc raw reads, Supplemental File 4 - mapping statistics, Supplemental Table 1 - omics samples, Supplemental file 3 - qc processed reads

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Repository for data analysis, Repository for reference genomes

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)

SOPs: DNA, RNA, Protein extraction from mineral samples, SOP - RNA-Prot sampling for bioleaching, Sample Identification Code

Data files: Rawdata RNAseq

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM_9293 (wild-type / wild-type)

SOPs: 003 Biomolecular Extractions from LAO (Qiagen A..., SOP - RNA-Prot sampling for bioleaching, Sample Identification Code

Data files: Rawdata RNAseq

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Sample information, TPM counts

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: LFQ intensities, Sample information

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: TwinSensNet

Snapshots: No snapshots

Organisms: Acidithiobacillus caldus : Acidithiobacillus caldus ATCC 51756 (wild-type / wild-type) (batch), Leptospirillum ferriphilum : Leptospirillum ferriphilum DSM 14647 (wild-type / wild-type) (batch), Sulfobacillus thermosulfidooxidans : Sulfobacillus thermosulfidooxidans DSM 9293 (wild-type / wild-type) (batch)

SOPs: No SOPs

Data files: Images of mineral colonization

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: No SOPs

Data files: Code for image analyses

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: LF_RNAseq_TPM_continuous, LF_RNAseq_TPM_mineral, LF_RNAseq_rawdata, LF_deseq_comparison, LF_omics_analysis, LF_omics_combined_Table

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: LF_LFQ_comparison_ttest, LF_omics_analysis, LF_omics_combined_Table, LF_proteomics_LFQs_continuous, LF_proteomics_LFQs_mineral, LF_proteomics_LFQs_mineral_scaled, LF_proteomics_continuous_scaled, LF_proteomics_maxquant_perseus_filtered, LF_proteomics_maxquant_perseus_unfiltered, Perseus workflow t-test, Proteomics data comparing LXX cultures cultivat...

Snapshots: No snapshots

Organisms: No organisms

SOPs: No SOPs

Data files: Functional_annotation_repository, LF_functional_annotation_gbk, LF_omics_combined_Table, LF_sequencing_data

Snapshots: No snapshots

Organisms: No organisms

SOPs: 003 Biomolecular Extractions from LAO (Qiagen A..., SOP - Bioleaching in flasks (LNU), SOP - RNA/Protein sampling for continuous culture

Data files: No Data files

Snapshots: No snapshots

Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type) (batch)

SOPs: MCF derivatization, Metabolome extraction, Spore batch generation

Data files: 1 hidden item

Snapshots: No snapshots

Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type) (batch)

SOPs: No SOPs

Data files: 2 hidden items

Snapshots: No snapshots

Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type) (batch)

SOPs: Cell dry weight (CDW) determination of Streptom..., Contamination test of Streptomyces coelicolor c..., Generation of cell material from Streptomyces c..., Generation of cell material from Streptomyces c..., Generation of cell material from Streptomyces c..., Preparation of inoculum for Streptomyces coelic..., Sampling from Streptomyces coelicolor culture f... and 1 hidden item

Data files: Fermentor 199 cultivation data

Snapshots: No snapshots

Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type) (batch)

SOPs: No SOPs

Data files: Fermentor 199 transcriptomics

Snapshots: No snapshots

Organisms: No organisms

Models: No Models

SOPs: README file for s-core / s-core+ perl script

Data files: Networks from human and mouse gene co-expressio..., Perl program for computing s-core and s-core+

Snapshots: No snapshots

Organisms: Streptomyces coelicolor : M145 (wild-type / wild-type)

Models: 1 hidden item

SOPs: No SOPs

Data files: No Data files

Snapshots: No snapshots