Data files
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Creator: Margrete Solheim
Submitter: Margrete Solheim
Creator: Sebastian Curth
Submitter: Sebastian Curth
Columnwise datamatrix of reactions, gene identifiers, substrates and products. The direction of reactions is not given.
Creator: Sebastian Curth
Submitter: Sebastian Curth
Creators: Franco du Preez, Jacky Snoep
Submitter: Franco du Preez
RNA processing and degradation is initiated by endonucleolytic cleavage of the target RNAs. In many bacteria, this activity is performed by RNase E which is not present in Bacillus subtilis and other Gram-positive bacteria. Recently, the essential endoribonuclease RNase Y has been discovered in B. subtilis. This RNase is involved in the degradation of bulk mRNA suggesting a major role in mRNA metabolism. However, only a few targets of RNase Y have been identified so far. In order to assess the ...
Creators: None
Submitter: Leif Steil
See wild type sample.
Creator: Jan-Willem Veening
Submitter: Jan-Willem Veening
WT 110901_SN865_B_L006_R1_GQC-28- ATCACG.fastq.gz 100 19.624.852 1,29
llumina fastq format 4 lines for each sequence: 1- Unique identifier, with the following format: @::::#/ 2- Sequence (A, T, C ,G or N (undetermined) only) 3- Orientation (always forward without mapping) 4- Quality value for each base, corresponding to a Phred-like score encoded in ASCII format, with an offset of of 33 (e.g. “J” gives a value of 41) and is in accordance with sanger FASTQ format. The sequence file is compressed ...
Creator: Jan-Willem Veening
Submitter: Jan-Willem Veening
Creator: Federico Rojas
Submitter: Federico Rojas
An example of a JERM-compliant template for RT-PCR data
This template was taken from the GEO website (http://www.ncbi.nlm.nih.gov/geo/info/spreadsheet.html) and modified to conform to the SysMO-JERM (Just enough Results Model) for transcriptomics.
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
TRK1 and TRK2
Creator: Clara Navarrete
Submitter: The JERM Harvester