Models

132 Models visible to you, out of a total of 232

Exactly the same as model 243, but uploaded as a file rather than copied from PlaSMo.

Creator: Andrew Millar

Contributor: Andrew Millar

This version is P2011.1.2, model ID PLM_71 version 1. Dynamics identical to P2011.1.1 of the Pokhilko et al. 2012 publication.

http://www.plasmo.ed.ac.uk/plasmo/models/download.shtml?accession=PLM_71&version=1

Creator: Andrew Millar

Contributor: Andrew Millar

Python scripts to run the analysis estimating rates of protein synthesis in the light and dark, and overall rates of protein turnover, in Cyanothece and Ostrecoccus tauri.

Creators: Daniel Seaton, Andrew Millar

Contributor: Daniel Seaton

No description specified

Creator: Daniel Seaton

Contributor: Daniel Seaton

This mechanistic ODE model describes the growth dynamics of P. aeruginosa, including an antibiotic-induced morphological transition to a fragile spherical form.

Creators: Chloe Spalding, Sara Jabbari

Contributor: Chloe Spalding

PGK-GAPDH model Sulfolobus kouril8

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK-GAPDH model yeast kouril7

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK-GAPDH models yeast and Sulfolobus Fig. 4 in manuscript

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK 70C model, Fig 3 in manuscript

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK 70C SBML

Creator: Jacky Snoep

Contributor: Jacky Snoep

BPG stability notebook

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK yeast Fig1a

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK yeast with/without recycling

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creator: Robert Muetzelfeldt

Contributor: Robert Muetzelfeldt

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

Metabolic model of Sulfolobus solfataricus P2 in the SBML (xml) and metano (txt, sce, fba) format. Scenarios are specific for growth on D-glucose or L-fucose as sole carbon source. Different theoretical routes of L-fucose degradation were modeled (E. coli-like, Xanthomonas-like and lactaldehyde-forming). Highest overall agreement between the model and experimental data was observed for the lactaldehyde-forming route.

Creators: Jacqueline Wolf, Helge Stark, Dietmar Schomburg

Contributor: Jacqueline Wolf

This is BIOMD0000000005.

Creators: Ron Henkel, Dagmar Waltemath

Contributor: Ron Henkel

No description specified

Creator: Matthias König

Contributor: Matthias König

The model presents a multi-compartmental (mesophyll, phloem and root) metabolic model of growing Arabidopsis thaliana. The flux balance analysis (FBA) of the model quantifies: sugar metabolism, central carbon and nitrogen metabolism, energy and redox metabolism, proton turnover, sucrose translocation from mesophyll to root and biomass growth under both dark- and light-growth conditions with corresponding growth either on starch (in darkness) or on CO2 (under light). The FBA predicts that
...

Creators: Maksim Zakhartsev, Olga Krebs, Irina Medvedeva, Ilya Akberdin, Yuriy Orlov

Contributor: Maksim Zakhartsev

E.coli Core model, with additional reactions added to generate the beta-oxadation cycle. This is the basic model used in RobOKoD: microbial strain design for (over)production of target compounds (http://fairdomhub.org/publications/236).

Creator: Natalie Stanford

Contributor: Natalie Stanford

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creator: Jacky Snoep

Contributor: Jacky Snoep

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