Models
What is a Model?Filters
The new GEM of S. coelicolor developed by Tjasa Kumelj, Snorre Sulheim, Alexander Wentzel and Eivind Almaas in 2017/2018
Creators: Snorre Sulheim, Tjasa Kumelj
Submitter: Snorre Sulheim
Model type: Stoichiometric model
Model format: SBML
Environment: Not specified
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Model type: Ordinary differential equations (ODE)
Model format: Mathematica
Environment: Mathematica
(Abudulikemu et al 2000 (also 2018) Standard model of acute mode Figure 32.
Creators: Hans V. Westerhoff, Ablikim Abudukelimu
Submitter: Hans V. Westerhoff
Model type: Ordinary differential equations (ODE)
Model format: SBML
Environment: JWS Online
Model that can be used to obtain the figures of Abudulikemu et al 2018: Abudukelimu, A., Barberis, M., Redegeld, F.A., Sahin, N., and Westerhoff, H.V. (2018). Predictable Irreversible Switching Between Acute and Chronic Inflammation. Front Immunol 9, 1596.
Creators: Hans V. Westerhoff, Ablikim Abudukelimu
Submitter: Hans V. Westerhoff
Model type: Ordinary differential equations (ODE)
Model format: Copasi
Environment: Copasi
Butanol producing iNS142, redesigned using RobOKoD.
Creator: Natalie Stanford
Submitter: Natalie Stanford
Model type: Metabolic network
Model format: SBML
Environment: Matlab
Originally submitted model file for PLaSMo accession ID PLM_62, version 1
Creators: BioData SynthSys, Martin Beaton
Submitter: BioData SynthSys
Model type: Not specified
Model format: SBGN-ML PD
Environment: Not specified
The relation of the interferon 2 pathway and SARS-CoV-2.
Creators: Anna Niarakis, Vidisha Singh, Sara Sadat AGHAMIRI
Submitter: Marek Ostaszewski
Model type: Graphical model
Model format: SBML
Environment: Not specified
The Interferon-lambda (IFNL) map describes the action of the drug candidate IFNL on intra- and intercellular signal transduction under SARS-CoV-2.
Creators: Marius Rameil, Vanessa Nakonecnij, Marta Conti
Submitter: Marek Ostaszewski
Model type: Graphical model
Model format: SBML
Environment: Not specified
The Folder contains:
- The MCMC and simulation results, as well as the synthetic data of the Chemical Reaction Network model (DoubleDecayIndep)
- The MCMC and simulation results, as well as the synthetic data of the Lotka-Volterra model (LotkaVolterraJoint)
Together with an executable ipynb script (Exe.ipynb) and the MCMC plotting and execution functions (MCMCFunctions.py).
Creator: Vincent Wagner
Submitter: Vincent Wagner
Model type: Ordinary differential equations (ODE)
Model format: Not specified
Environment: Not specified