Models

118 Models visible to you, out of a total of 194
No description specified

Creators: Dawie Van Niekerk, Jacky Snoep

Contributor: Dawie Van Niekerk

No description specified

Creator: Jacky Snoep

Contributor: Jacky Snoep

No description specified

Creator: Jacky Snoep

Contributor: Jacky Snoep

Simplified model of the electron-transport chain(s) (ETC) of Escherichia coli and its regulation by ArcA and FNR. The goal is to demonstrate a hypothetical design principle in the regulatory structure (->partly qualitative parameter values). Oxygen is changed slowly (100% aerobiosis at 1000000 time units) thus the basis variable is not the time but the oxygen flux voxi.

Creator: Sebastian Henkel

Contributor: Sebastian Henkel

This is BIOMD0000000005.

Creators: Ron Henkel, Dagmar Waltemath

Contributor: Ron Henkel

The model file represents the expression of beta-gal from a sigB dependent promoter after sigb production was stimulated by IPTG. The model is based on an assumption that a hypothetical protein degrates the sigb factor.

Creator: Ulf Liebal

Contributor: Ulf Liebal

This is a JWS model of the successful model for data representation. It realises regulation by a hypothetical sigB dependent protein that degrades beta-Gal.

Creator: Ulf Liebal

Contributor: Ulf Liebal

only lacZ synthesis reduced by inhibitor in BSA115

Creator: Ulf Liebal

Contributor: Ulf Liebal

The zip file contains model files and an experiment file. Unpack it in a directory and navigate with matlab to there. Use the 'matlab_execution_guide.m' for simulation and visualisation of the model. This file is written in matlab cell mode, so it is not a stand alone function.

Three models have been developed to test their capacity to reproduce the experimental data from Study: 'Controlled sigmaB induction in shake flask' with Assay: 'IPTG induction of sigmaB in BSA115'.
One model assumes a
...

Creator: Ulf Liebal

Contributor: Ulf Liebal

The model represents a hypothetical situation in which an anti-sigmafactor reduces sigB efficacy.

Creator: Ulf Liebal

Contributor: Ulf Liebal

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