Models

What is a Model?
418 Models visible to you, out of a total of 662
No description specified

Creators: Dawie van Niekerk, Jacky Snoep

Submitter: Dawie van Niekerk

No description specified

Creator: Jacky Snoep

Submitter: Jacky Snoep

No description specified

Creator: Jacky Snoep

Submitter: Jacky Snoep

Simplified model of the electron-transport chain(s) (ETC) of Escherichia coli and its regulation by ArcA and FNR. The goal is to demonstrate a hypothetical design principle in the regulatory structure (->partly qualitative parameter values). Oxygen is changed slowly (100% aerobiosis at 1000000 time units) thus the basis variable is not the time but the oxygen flux voxi.

Creator: Sebastian Henkel

Submitter: Sebastian Henkel

The folder contains the jupyter notebook for the execution of all analyses of the study. The BEST method is used in the notebook and is added in a separate python skript.

There is a class for the BEST method according to Kruschke and a class für the BEST multiple comparison.

A conda environment file with all libraries that are necessary to perform the analysis, including the package version was created. It can be easily installed via conda env create -f pymc_env.yml

Creator: Sebastian Höpfl

Submitter: Sebastian Höpfl

This is BIOMD0000000005.

Creators: Ron Henkel, Dagmar Waltemath

Submitter: Ron Henkel

BPG stability notebook

Creator: Jacky Snoep

Submitter: Jacky Snoep

NetLogo desktop version of Breast cancer development agent based model

Creator: Hannah O'Keefe

Submitter: Hannah O'Keefe

The model file represents the expression of beta-gal from a sigB dependent promoter after sigb production was stimulated by IPTG. The model is based on an assumption that a hypothetical protein degrates the sigb factor.

Creator: Ulf Liebal

Submitter: Ulf Liebal

This is a JWS model of the successful model for data representation. It realises regulation by a hypothetical sigB dependent protein that degrades beta-Gal.

Creator: Ulf Liebal

Submitter: Ulf Liebal

only lacZ synthesis reduced by inhibitor in BSA115

Creator: Ulf Liebal

Submitter: Ulf Liebal

The zip file contains model files and an experiment file. Unpack it in a directory and navigate with matlab to there. Use the 'matlab_execution_guide.m' for simulation and visualisation of the model. This file is written in matlab cell mode, so it is not a stand alone function.

Three models have been developed to test their capacity to reproduce the experimental data from Study: 'Controlled sigmaB induction in shake flask' with Assay: 'IPTG induction of sigmaB in BSA115'. One model assumes a ...

Creator: Ulf Liebal

Submitter: Ulf Liebal

The model represents a hypothetical situation in which an anti-sigmafactor reduces sigB efficacy.

Creator: Ulf Liebal

Submitter: Ulf Liebal

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