Carbon Core deFBA Model
Version 1

LightningSimulate Model on JWS BuildDownload ZoomView content

A small model representing the core carbon network in each cell. For more detail on the model creation see [1]. The model is written in SBML using the RAM extension for use in deFBA. Compatible python software for simulation can be found at https://tinyurl.com/yy8xu4v7

[1] S. Waldherr, D. A. OyarzĂșn, A. Bockmayr. Dynamic optimization of metabolic networks coupled with gene expression. In: Journal of Theoretical Biology, 365(0): 469 - 485.

SEEK ID: https://fairdomhub.org/models/557?version=1

1 item is associated with this Model:
  • carbon_core_with_O2.xml (XML document - 44.5 KB) Zoom Download

Organism: Not specified

Model type: Stoichiometric model

Model format: SBML

Execution or visualisation environment: Not specified

DOI: 10.15490/fairdomhub.1.model.557.1

Model image: No image specified

Help
help Contributor and Creators
Citation
Lindhorst, H., & Waldherr, S. (2019). Carbon Core deFBA Model. FAIRDOMHub. http://doi.org/10.15490/fairdomhub.1.model.557.1
Activity

Views: 106   Downloads: 1

Created: 11th Mar 2019 at 15:44

Last updated: 11th Mar 2019 at 16:12

Last used: 20th May 2019 at 11:28

help Attributions

None

Related items

Powered by
Seek new full
(v.1.8.2)
Copyright © 2008 - 2019 The University of Manchester and HITS gGmbH