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Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-9, docked to the M-loop region of a Trypanosoma brucei alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the M-loop region residue Leu286 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow (Schrödinger, LLC, New York, NY, Schrödinger ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-5 and 7-9, docked to the interface region between two neighboring alpha-tubulin monomers of Trypanosoma brucei; alpha-tubulin homology models were built on PDB-ID 5ubq and two monomeric models were aligned to neighboring protofilamentsof the original PDB-ID 5ubq to construct an interface-model receptor. The docking grid was centered on the M-loop region residue ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-9, docked to the N-loop region of a Trypanosoma brucei alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the N-loop region residue Phe49 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow (Schrödinger, LLC, New York, NY, Schrödinger ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Trypanosoma brucei multimeric alpha-tubulin protein receptor for docking studies, generated by alignment of two identical models of T. brucei alpha-tubulin on template 5ubq alpha-tubulin chains of two neighboring protofilaments (A, C).
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for dinitroaniline etherphospholipid hybrid compounds 1, 2, 4, 5 and 9 and reference compound trifluraline, docked to the Blume site of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on site residue Ala4 (T. cruzi numbering). No results were obtained with compounds 3 and 6-8.
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compounds 1, 4, 8 and reference compound trifluraline, docked to the Consensus site (Delye, Mitra & Sept) of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on site residue Thr239 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compounds 1, 4, 8 and reference compound trifluraline, docked to the Consensus site (Delye, Mitra & Sept) of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on site residue Thr239 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-9, and reference compound trifluraline, docked to the M-loop region of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the M-loop region residue Leu286 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-5 and 7-9, docked to the interface region between two neighboring alpha-tubulin monomers of Trypanosoma cruzi; alpha-tubulin homology models were built on PDB-ID 5ubq and two monomeric models were aligned to neighboring protofilaments of the original PDB-ID 5ubq to construct an interface-model receptor. The docking grid was centered on the M-loop region residue ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-9, and reference compound trifluralin, docked to the N-loop region of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the N-loop region residue Phe49 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compounds 1, 2, 4, 8 and reference compound trifluraline, docked to the pironetin site of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on site residue Leu238 (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced Fit docking workflow (Schrödinger, LLC, ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compounds 1-2, 4-5 and 7-8, docked to the resulting complex of reference compound trifluralin in the Blume site of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the trifluralin reference compound (T. cruzi numbering). No results were obtained for compounds 3, 6 and 9.
The docking results were obtained by Induced Fit docking ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compounds 1-5 and 7-8, docked to the resulting complex of reference compound trifluralin in the Consensus site of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the trifluralin reference compound (T. cruzi numbering). No results were obtained for compounds 6 and 9.
The docking results were obtained by Induced Fit docking ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-9, docked to the resulting complex of reference compound trifluralin to the M-loop region of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the trifluralin reference compound (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for each dinitroaniline etherphospholipid hybrid compound, compound 1-9, docked to the resulting complex of reference compound trifluralin to the N-loop region of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the trifluralin reference compound (T. cruzi numbering).
The docking results were obtained by Induced Fit docking with Schrödinger Glide and Prime in the Induced ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Zip-archive with top-ranked (by IFDScore) induced fit docking results for dinitroaniline etherphospholipid hybrid compounds 1-4 and 7-8 docked to the resulting complex of reference compound trifluralin in the pironetin site of a Trypanosoma cruzi alpha-tubulin homology model built on PDB-ID 5ubq. The docking grid was centered on the trifluralin reference compound (T. cruzi numbering). No results were obtained for compounds 5, 6 and 9.
The docking results were obtained by Induced Fit docking with ...
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
Trypanosoma cruzi multimeric alpha-tubulin protein receptor for docking studies, generated by alignment of two identical models of T. cruzi alpha-tubulin on template 5ubq alpha-tubulin chains of two neighboring protofilaments (A, C).
Creators: Ina Poehner, Rebecca Wade
Submitter: Ina Poehner
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq
Creators: Fabian Grammes, Yang Jin
Submitter: Sahar Hassani
Mean and standard deviation of protein abundances in 6h, 8h, 12h, and 18h photoperiods.
Creators: Daniel Seaton, Andrew Millar
Submitter: Daniel Seaton
Results of the statistical analysis, identifying proteins that change in abundance significantly across photoperiods.
Creators: Daniel Seaton, Andrew Millar
Submitter: Daniel Seaton
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
In vitro early toxicity profiles (all experiments were performed in triplicate, IC50 in μM) for the reference drugs Pentamidine (PEN), Benzidazole (BZD), Amphotericin B (AmB) and Miltefosine (MIL).
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Very simplistic unrealistic values for tamoxifen Kinetics (Km). For use in a simple graphical model.
Creator: Hannah O'Keefe
Submitter: Hannah O'Keefe
grid for ROMS
Creator: Xiangcheng Li
Submitter: Xiangcheng Li
Creators: None
Submitter: Marta Eide
Creator: Sebastian Curth
Submitter: Sebastian Curth
Out
Creator: Sebastian Curth
Submitter: Sebastian Curth
Measurement of oxidative stress (TBARS) assay in liver of cod caged in Kollevåg and at reference location.
Creators: None
Submitter: Karina Dale
PDB file of the prepared Trypanosoma brucei dihydrofolate reductase docking receptor based on chain A of PDB-ID 3rg9 without water molecules.
Creators: Ina Poehner, Joanna Panecka-Hofman, Rebecca Wade
Submitter: Ina Poehner
PDB file of the prepared Trypanosoma brucei pteridine reductase 1 docking receptor based on chain A of PDB-ID 2x9g with a conserved set of structural waters.
Creators: Ina Poehner, Joanna Panecka-Hofman, Rebecca Wade
Submitter: Ina Poehner
PDB file of the prepared Trypanosoma brucei pteridine reductase 1 docking receptor based on chain A of PDB-ID 2x9g without additional water molecules.
Creators: Ina Poehner, Joanna Panecka-Hofman, Rebecca Wade
Submitter: Ina Poehner
A brief summary of the first activity, proposed in our teaching sequence.
Creator: Ioannis Metaxas
Submitter: Ioannis Metaxas
A brief description of the second educational activity.
Creator: Ioannis Metaxas
Submitter: Ioannis Metaxas
A brief discription of the third educational activity.
Creator: Ioannis Metaxas
Submitter: Ioannis Metaxas
Simulation results of temperature degradation of gluconeogenic intermediates
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
Experimental data for determination of half-life of gluconeogenic intermediates (BPG, GAP and DHAP).
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
MIAPE based Gel Electrophoresis Data Entry Worksheet
Creators: Olga Krebs, Holger Janssen
Submitter: Olga Krebs
Testing data upload
Creator: Chris Wilson
Submitter: Chris Wilson
How to connect to the FAIRDOM SEEK with the collection of their APIs.
Creators: None
Submitter: Andrej Blejec
test file
Creators: Olga Krebs, Vânia Pobre
Submitter: Olga Krebs
Creator: Birger Wolter
Submitter: Birger Wolter
Excel file with data on levels of thiamine and its metabolites TMP and active cofactor TDP, tested in Col and prr7prr9 samples from study Laurel and Hardy 3. Altered levels of TDP could potentially affect enzymes with TDP cofactors that metabolise malate and fumarate levels, altering their levels in prr7prr9.
Creators: Yin Hoon Chew, Michael Moulin, Teresa Fitzpatrick
Submitter: Andrew Millar
The fasta file contains amino acid sequences of genes forming the accessory genome of the Clostridium beijerinckii species.
Creator: Karel Sedlar
Submitter: Karel Sedlar
The fasta file contains amino acid sequences of genes forming the accessory genome of the Clostridium beijerinckii species. As BLAST might experience some errors with repetitive sequences, here 76 sequences with a single kind of amino acid forming more than 25% of a sequence were discarded.
Creator: Karel Sedlar
Submitter: Karel Sedlar
Recent studies revealed the unsuspected complexity of the bacterial transcriptome but its systematic analysis across many diverse conditions remains a challenge. Here we report the condition-dependent transcriptome of the prototype strain B. subtilis 168 across 104 conditions reflecting the bacterium's life-styles. This data set composed of 269 tiling array hybridizations allowed to observe ~85% of the annotated CDSs expressed in the higher 30% in at least one hybridization and thus provide an ...
Creators: Leif Steil, Ulrike Mäder, Colin Harwood, Rick Lewis, Ruben Mars, Priyanka Nannapaneni, Praveen kumar Sappa, Joerg Stuelke, Jan Maarten van Dijl, Michael Hecker, Uwe Voelker
Submitter: Leif Steil
The fasta file contains amino acid sequences of genes forming the core genome of the Clostridium beijerinckii species.
Creator: Karel Sedlar
Submitter: Karel Sedlar
Heterologous Expression of LDHs from different lactic acid bacteria in Escherichia coli DH5α.
Assessment of kinetic parameters of LDH to include in a catabolic model.
Creators: Silvio Hering, Tomas Fiedler
Submitter: Silvio Hering
Here published artikel about The FAIR Guiding Principles for scientific data management and stewardship
Creators: None
Submitter: Olga Krebs
TOK1 TRK1 TRK2
Creator: Silvia Petrezselyova
Submitter: The JERM Harvester
How to get to the hotel from rail station
Creator: Olga Krebs
Submitter: Olga Krebs
Westerhoff H.V. and Van Dam K. (1987) Thermodynamics and control of biological free-energy transduction, Elsevier, Amsterdam ISBN: 0-444-80783-7 (U.S.)
This monograph gives the basis of both non equilibrium thermodynamics and metabolic control analysis in biology. It is rife with examples from bioenergetics.
It is also a compilation of mathematical equations and text and hence serves as a data file for mathematical biology and biological modelling
Creator: Hans V. Westerhoff
Submitter: Hans V. Westerhoff
working document 31 January 2022 Context is the equilibrium constants measurement standardization
Creators: Hans V. Westerhoff, Peter Halling
Submitter: Hans V. Westerhoff
Creator: Huseyin Tas
Submitter: Huseyin Tas
Creator: Cornelius Erbelding
Submitter: Cornelius Erbelding
RNA levels for control amplicons and multiple clock genes in 2 WT (Col, Ws) and 5 clock mutants of Arabidopsis, in biological duplicates, from three conditions: Diurnal cycle (12L/12D), Extended night (DD), Extended light (LL), harvested every 2 hours. Numbers are in transcript copy per cell, obtained assuming 1 g FW contains 25000000 cells. Comments: Data from LD are concateneted with DD and LL for better visualization. Toc1-101 (col-0) gi-201 (col-0) prr7-3 prr9-1 (col-0) , lhy cca1 (ws) elf3-4 ...
Creator: Andrew Millar
Submitter: Andrew Millar
Analysis of carbon metabolites in clock mutants by Anna Flis and Ronan Sulpice, Mark Stitt lab
Creators: Andrew Millar, Anna Flis, Ronan Sulpice, Mark Stitt
Submitter: Andrew Millar
Batch sample publishing
Creators: None
Submitter: Dikshant Pradhan
Creators: None
Submitter: Jake Schissel
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
This pdf contains the top 10 markers for each identified cell type as a dot-plot.
Creators: Markus Wolfien, Anne-Marie Galow
Submitter: Markus Wolfien
This file contains the top markers for the identified cell types.
Creators: Markus Wolfien, Anne-Marie Galow
Submitter: Markus Wolfien
This dot-plot represents only the most significant genes per identified cell type cluster.
Creators: Markus Wolfien, Anne-Marie Galow
Submitter: Markus Wolfien
This pdf contains the top 10 markers for each identified cell type as a dot-plot.
Creator: Anne-Marie Galow
Submitter: Anne-Marie Galow
This file contains the top 100 transcripts for the identified cell types in the integrated dataset.
Creator: Anne-Marie Galow
Submitter: Anne-Marie Galow
Creator: Sebastian Curth
Submitter: Sebastian Curth
Kinetic characterisation of TPI. Experimental data for enzyme reaction rates with increasing concentrations of DHAP and GAP, and inhibition with 3PG and PEP.
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
Experimental data set for the kinetic characterisation of TPI
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Simulation results of TPI experimental data for GAP and DHAP saturation.
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
TPM counts for protein coding genes, alongside functional annotations
Creator: Malte Herold
Submitter: Malte Herold
Deatiled agenda forBest practices in research data management and stewardship (2021-06-14)
Creator: Olga Krebs
Submitter: Olga Krebs
Creator: Praveen kumar Sappa
Submitter: The JERM Harvester
Creators: Ulrike Mäder, Joerg Stuelke, Praveen kumar Sappa, Martin Lehnik-Habrink, Marc Schaffer
Submitter: Praveen kumar Sappa
Mutants with defects in glucose transport systems were analyzed in a bioreactor and the transcription of certain uptake systems analyzed. Transcription profiles between batch and chemostat conditions were compared
Creator: Sonja Steinsiek
Submitter: Sonja Steinsiek
Transcription of glucose uptake transport systems in a mutant background under aerobic batch conditions.
Creator: Sonja Steinsiek
Submitter: Sonja Steinsiek
Transcription of glucose uptake transport systems in a mutant background under anaerobic batch conditions.
Creator: Sonja Steinsiek
Submitter: Sonja Steinsiek
Transcriptome analysis suggests a compensatory role of the cofactors coenzyme A and NAD+ in medium-chain acyl-CoA dehydrogenase knockout mice. During fasting, mitochondrial fatty-acid β-oxidation (mFAO) is essential for the generation of glucose by the liver. Children with a loss-of-function deficiency in the mFAO enzyme medium-chain acyl-Coenzyme A dehydrogenase (MCAD) are at serious risk of life-threatening low blood glucose levels during fasting in combination with intercurrent disease. However, ...
Creators: PoLiMeR_user Martines_data, Terry G.J. Derks, Barbara Bakker, Martines AMF
Submitter: PoLiMeR_user Martines_data
Creators: Andreas Albersmeier, Jörn Kalinowski
Submitter: Jacqueline Wolf
Micro array analysis of steady-state growing cells of Clostridium acetobutylicum at pH 5.7 (acidogenesis) in comparison to pH 4.5 (solventogenesis).
Creator: Holger Janssen
Submitter: Holger Janssen
Micro array analyses of all mRNA levels of cells growing at steady state pH values 5.7, 5.5, 5.3, 5.1, 4.9, 4.7 compared to the same reference steady-state pH 4.5.
Creator: Holger Janssen
Submitter: Holger Janssen
In this study, we used publically available dataset from gene expression omnibus (GEO):
The pathophysiological mechanisms that drive non-alcoholic fatty liver disease (NAFLD) progression remain poorly understood. This multicenter study characterized the transcriptional changes that occur as liver disease progresses. 216 snap frozen liver biopsies, comprising 206 NAFLD cases with different fibrosis stages and 10 controls were studied. Samples underwent high-throughput RNA sequencing. This study ...
Creator: Govaere O et.al.
Submitter: Hong Yang
Creator: Angeles Hueso-Gil
Submitter: Angeles Hueso-Gil
This template is for recording gene expression data from the NimbleGen platform. This template was taken from the GEO website (http://www.ncbi.nlm.nih.gov/geo/info/spreadsheet.html) and modified to conform to the SysMO-JERM (Just enough Results Model) for transcriptomics. Using these templates will mean easier submission to GEO/ArrayExpress and greater consistency of data in SEEK.
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
RNAseq analysis of S. solfataricus grown on either L-fucose or D-glucose
Creators: Jacqueline Wolf, Theresa Kouril, Andreas Albersmeier, Jörn Kalinowski
Submitter: Jacqueline Wolf
An example template for MAGE-TAB compliant transcriptomics data. This example only covers the Investigation Description Format (IDF) and the Sample and Data Relationship Format (SDRF) worksheets (i.e. the metadata from a microarray experiment). This template was generated automatically using the ArrayExpress submission help tool (http://www.ebi.ac.uk/cgi-bin/microarray/magetab.cgi)
Creators: Katy Wolstencroft, Olga Krebs
Submitter: Katy Wolstencroft
Please fill in thistravel expense reimbursement report and send it together with original receipts to HITS
Creator: Olga Krebs
Submitter: Olga Krebs
Data file for PLaSMo accesssion ID PLM_5, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
TRK1, TRK2
Creator: Silvia Petrezselyova
Submitter: The JERM Harvester
All datapoints that were measured are displayed together with the accompanying simulations by the computational model
Creators: Jurgen Haanstra, Alejandro Leroux
Submitter: Jurgen Haanstra
An extended model description of the TryS model
Creators: Jurgen Haanstra, Alejandro Leroux
Submitter: Jurgen Haanstra
The tutorial provided for EraSysAPP PALs. Covers new features associated with generating snapshots, research objects, and assigning DOIs to investigation snapshots in order to make them citable structures.
Creator: Natalie Stanford
Submitter: Natalie Stanford
Source code for running simulations
Creator: Malte Herold
Submitter: Malte Herold