Data files
What is a Data file?Filters
Creator: Ulrike Wittig
Submitter: Ulrike Wittig
Creator: Ulrike Wittig
Submitter: Ulrike Wittig
Creator: Ulrike Wittig
Submitter: Maja Rey
Creators: Maja Rey, Ulrike Wittig
Submitter: Maja Rey
Raw data for mixed culture biofilm proteomics
Samples: UDE-SAL8-7O-M-B-Pr-2 UDE-SAL8-7O-M-B-Pr UDE-SAL7-Pc20-7M-P-B-Pr_2uL UDE-SAL7-A7-M-B-Pr UDE-SAL7-7C-M-B-Pr UDE-SAL7-7A-M-B-Pr
Creator: Malte Herold
Submitter: Malte Herold
Raw data for tertiary mixture, planktonic cells, proteomics
Creator: Malte Herold
Submitter: Malte Herold
Main page at NCBI for the salmon genome. Contains download links to annotation GFF, genome sequence FASTA, etc.
Creator: Jon Olav Vik
Submitter: Jon Olav Vik
The file contains the GC-MS raw data as cdf files, a sample list and an excel sheet with the results of metabolome analysis.
Creators: Jacqueline Wolf, Meina Neumann-Schaal
Submitter: Jacqueline Wolf
This Excel file lists the samples uploaded in PRIDE. The table “Table Sorted PP and Replicates” in the Excel file has all the relevant annotation.
There are more than the expected 168 samples in the PRIDE upload for the following reasons:
First, all of the measurements from the experiment had been uploaded, including files for measurements that were repeated because of problems during the MS run. These samples are not annotated in the table. Second, we had included 4 Gold Standard samples (2 ...
Creators: Alexander Graf, Katja Baerenfaller, Willi Gruissem
Submitter: Andrew Millar
Information for RNA and protein samples and cultures they were derived from.
Creator: Malte Herold
Submitter: Malte Herold
Data file for PLaSMo accesssion ID PLM_12, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Information on samples submitted for RNAseq
Rows are individual samples
Columns are: ID Sample Name Date sampled Species Sex Tissue Geographic location Date extracted Extracted by Nanodrop Conc. (ng/µl) 260/280 260/230 RIN Plate ID Position Index name Index Seq Qubit BR kit Conc. (ng/ul) BioAnalyzer Conc. (ng/ul) BioAnalyzer bp (region 200-1200) Submission reference Date submitted Conc. (nM) Volume provided PE/SE Number of reads Read length
Creator: Thomas Harvey
Submitter: Thomas Harvey
Creator: Fatemeh Zamanzad Ghavidel
Submitter: Fatemeh Zamanzad Ghavidel
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Batch sample publishing
Creator: Dikshant Pradhan
Submitter: Dikshant Pradhan
Creator: Jake Schissel
Submitter: Jake Schissel
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Batch sample publishing
Creator: Charles Demurjian
Submitter: Charles Demurjian
Creators: Jasper Koehorst, Jon Olav Vik, Peter Schaap
Submitter: Jasper Koehorst
Raw proteomics data for St + Ac planktonic cells
Creator: Malte Herold
Submitter: Malte Herold
Creators: Dorothee Houry, Arne Raasakka, Petri Kursula
Submitter: Dorothee Houry
Data file for PLaSMo accesssion ID PLM_71, version 2
Creators: BioData SynthSys, Andrew Millar, Andrew Millar
Submitter: BioData SynthSys
Validation of the sc-SynO model for the first use case of cardiac glial cell annotation. UMAP representation of the manually clustered Bl6 dataset of Wolfien et al. (2020) Precicted cells of sc-SynO are highlighted in blue, cells not chosen are grey. UMAP representation of the manually clustered dataset of Vidal (2019). Precicted cells of sc-SynO are highlighted in blue, cells not chosen are grey. Average expression of the respective top five cardiac glial cell marker genes for both validation ...
Creators: Markus Wolfien, Saptarshi Bej
Submitter: Markus Wolfien
Validation of the sc-SynO model for the second use case of proliferative cardiomyocytes annotation. a) UMAP representation of the manually clustered single-nuclei dataset of Linscheid et al. (2019) Precicted cells of sc-SynO are highlighted in blue (based on top 20 selected features in the training model), red (based on top 100 selected features in the training model) cells not chosen are grey. b) UMAP representation of the manually clustered dataset of Vidal et al. (2020). PPrecicted cells of ...
Creators: Markus Wolfien, Saptarshi Bej
Submitter: Markus Wolfien
Visualization of the workflow demonstrating a step-by-step explanation for a sc-SynO analysis. a) Several or one snRNA-Seq or scRNA-Seq fastq datasets can be used as an input. Here, we identify our cell population of interest and provide raw or normalized read counts of this specific population to sc-SynO for training. b) Further information for cluster annotation and processed count data are serving as input for the core algorithm. c) Based on the data input, we utilize the LoRAS synthetic ...
Creators: Markus Wolfien, Saptarshi Bej
Submitter: Markus Wolfien
Creators: Jay Moore, David Hodgson
Submitter: Jay Moore
Creators: Jay Moore, David Hodgson
Submitter: Jay Moore
Data file for PLaSMo accesssion ID PLM_1, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_3, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_22, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_02_UlrichTop100-BLAST/
Creator: Marko Petek
Submitter: Marko Petek
_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_03-Centrifuge/
Creator: Marko Petek
Submitter: Marko Petek
_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_06_SxPv1-0_Illumina-Centrifuge/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_CoExpNetViz/_A_02_Nb_datasets-CoExp/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_07_NbAUSv1-0-InterPro/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-newG-DE/_A_07_NbAUSv1-0-InterPro/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/
Creator: Marko Petek
Submitter: Marko Petek
_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_07_allReads_meta-assembly/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_CoExpNetViz/_A_02_Nb_datasets-CoExp/
Creator: Marko Petek
Submitter: Marko Petek
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_08_SelTargetsA-dry/
Creator: Marko Petek
Submitter: Marko Petek
_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_06_splitter_BLAST-dry/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_CoExpNetViz/_A_02_Nb_datasets-CoExp/
Creator: Marko Petek
Submitter: Marko Petek
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-oldG-DE/_A_03a_mapping2-STAR/
Creator: Marko Petek
Submitter: Marko Petek
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Zip archive of N1 protonated reference and newly synthesized pteridines (series 1-5) in SDF format.
Creators: Ina Poehner, Joanna Panecka-Hofman, Rebecca Wade
Submitter: Ina Poehner
after shankra, saving the images that could not be analysed earlier. here they are simply treated by imagej change in brightness/contrast. the same can also be done with imagemagic.
Creator: Antoine Buetti-Dinh
Submitter: Antoine Buetti-Dinh
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Note: "FigSM.A.1_Model-A.cps" corresponds to "SM-A-no design FigSM.A.1_Model-A.cps" in Suppl. Inform.
Creator: Alexey Kolodkin
Submitter: Alexey Kolodkin
Creator: Alexey Kolodkin
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Creators: Alexey Kolodkin, Hans V. Westerhoff, Raju Prasad Sharma
Submitter: Alexey Kolodkin
Concentrations of metals, PAHs and PCBs in sediment samples from Kollevåg and reference site.
Creators: None
Submitter: Karina Dale
Creators: Ron Henkel, Dagmar Waltemath
Submitter: Ron Henkel
Data file for PLaSMo accesssion ID PLM_52, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_66, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_51, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Creators: Maja Rey, Ulrike Wittig
Submitter: Maja Rey
This report gives an overview of the sessions and outcomes from the recent SEEK Users meeting in Berlin. Please see related 'Presentation' entries for related slides and supplementary material.
Creator: Katy Wolstencroft
Submitter: Katy Wolstencroft
Semi-targeted Mass Spectrometry proteomics study to detect 12 selected proteins of two serum samples belonging to the FOLFOX-4 study on heavly-pretreated ovarian cancer patients. The two samples, F10 and F12, are basal samples collected at before the first FOLFOX-4 treatment cycle (T0) and were selected for this study because they show a different proteome profile.
Model analysis results in binary Matlab format
Creator: Daniel Seaton
Submitter: Daniel Seaton
This .csv file contains growth parameters measured from chemostat runs of the Sheffield Infors chemostats. The runs were carried out for acetate calibration purposes and for sampling for the steady-state transcriptional profiles.
Columns: Date O2_input (% total) Aerobiosis level (%AAU) OD600 Redox (mV) pO2 (μM) DCW (g/L) Viable cell counts (CFU/ml) RespRate (mmol/h/gDCW) RespRate STDEV [Acetate] (mM) Qacet (mmoles/h/gDCW)
Creator: Matthew Rolfe
Submitter: The JERM Harvester
This .pdf file shows a graphical representation of the physiological measurements from the Sheffield Infors chemostat which were made during acetate calibration and also when sampling for the steady-state transcriptional profiles.
Creator: Matthew Rolfe
Submitter: The JERM Harvester
Creator: Matthew Rolfe
Submitter: The JERM Harvester
Creator: Matthew Rolfe
Submitter: The JERM Harvester
Prorocentrum cordatum was subjected to whole cell shotgun analyses (in-solution digest) unsing nanoLC ESI-intrap MS/MS
Creators: None
Submitter: Lars Wöhlbrand
Creators: None
Submitter: Lars Wöhlbrand
Data file for PLaSMo accesssion ID PLM_11, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_2, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_75, version 1
Creators: BioData SynthSys, Yin Hoon Chew, Yin Hoon
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_73, version 1
Creators: BioData SynthSys, Yin Hoon Chew, Yin Hoon
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_22, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_74, version 1
Creators: BioData SynthSys, Yin Hoon Chew, Yin Hoon
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_23, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_11, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_11, version 2
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_23, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_24, version 1
Creators: BioData SynthSys, Jonathan Massheder
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_23, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_22, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_30, version 1
Creators: BioData SynthSys, Andrew Millar, Andrew Millar
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_3, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_3, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_41, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_1, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_3, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_33, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_38, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_76, version 1
Creators: BioData SynthSys, Yin Hoon Chew, Yin Hoon
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_2, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_32, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_34, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_35, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_36, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_37, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_39, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_40, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_41, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Data file for PLaSMo accesssion ID PLM_6, version 1
Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar
Submitter: BioData SynthSys
Simulation results of experimental data of the reconstituted gluconeogenic system
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
The file contains simulated data of the electron transport chain model (EcoliETC1) for varying parameter values, i.e. a local sensitivity analysis.
Creator: Sebastian Henkel
Submitter: The JERM Harvester
Data file for PLaSMo accesssion ID PLM_66, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
Small set of values for entering into NetLogo simulation
Creator: Hannah O'Keefe
Submitters: Daryl Shanley, Hannah O'Keefe
Small set of values for entering into NetLogo Simulation
Creator: Hannah O'Keefe
Submitter: Hannah O'Keefe
Owner: Nils Gehlenborg (nils@hms.harvard.edu)
Creators: Theresa Bender, Christian Bauer
Submitter: Theresa Bender
Raw data for mixed cultures of S. thermosulfidooxidans and L.ferriphilum
Creator: Malte Herold
Submitter: Malte Herold
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Creator: Pasquale Linciano
Submitter: Pasquale Linciano
Compound SMILES of resynthesized or newly designed pteridine compounds 1b, 1c, 2a-e, 3a-e, 4a-j and 5a-f used for ligand preparation within Maestro (Schrödinger, LLC, New York, NY, Schrödinger Release 2015-4, 2015, Maestro.). SMILES strings and compound identifiers are comma-separated and can be readily imported in Maestro.
Creators: Ina Poehner, Antonio Quotadamo
Submitter: Ina Poehner
See Figure 2 caption.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See Figure 2 caption
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See Figure 2 caption.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See Figure 2 caption.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See Figure 2 caption.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See Figure 2 caption.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See Figure 2 caption.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
See 'Figure 3 legend' and 'Materials and methods - Time course experiments, cell lysis and quantitative immunoblotting' for details.
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Specific activity of Gre2p was measured after different treatments (none, on ice, at room temperature, in the ITC, stirred, shaken). These data are used to perform a Selwyn Test to determine if enzyme inactivation or slow-onset inhibition occurs. This is a file that can be opened with the Origin Software for analysis and contains data copied in manually from the xlsx.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Specific activity of Gre2p was measured after different treatments (none, on ice, at room temperature, in the ITC, stirred, shaken). These data are used to perform a Selwyn Test to determine if enzyme inactivation or slow-onset inhibition occurs. These are the raw data obtained directly from the Synergy UV-Vis Spectrophotometer.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Specific activity of Gre2p was measured after incubation with different Tween-20 concentrations (none, 0.01, 0.1, 1.0%). These data are also used to perform a Selwyn Test to determine if enzyme inactivation or slow-onset inhibition occurs. This is a file that can be opened with the Origin Software for analysis and contains data copied in manually from the xlsx.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Specific activity of Gre2p was measured after incubation with different Tween-20 concentrations (none, 0.01, 0.1, 1.0%). These data are also used to perform a Selwyn Test to determine if enzyme inactivation or slow-onset inhibition occurs. These are the raw data obtained directly from the Synergy UV-Vis Spectrophotometer.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Reference genome of Sulfolobus solfataricus P2 used for mapping of RNA-seq results. Based on NCBI genome of Sulfolobus solfataricus.
Creators: Stefan Albaum, Andreas Albersmeier (CeBiTec, University of Bielefeld), Jörn Kalinowski (CeBiTec, University of Bielefeld)
Submitter: Stefan Albaum
Creator: Theresa Kouril
Submitter: Theresa Kouril
Creators: Theresa Kouril, Jacky Snoep
Submitter: Theresa Kouril
Creators: Theresa Kouril, Jacky Snoep
Submitters: Jacky Snoep, Theresa Kouril
metabolite quantification via enzymatic analysis
Creators: Theresa Kouril, Jacky Snoep
Submitter: Theresa Kouril
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Incorporate research data
Creator: Runyu Liang
Submitter: Runyu Liang
Transcriptional profiles of steady-state chemostat cultures were measured at a range of oxygen levels using microarrays. Oxygen levels were defined by the aerobiosis scale of Alexeeva et al. (2002).
Creator: Matthew Rolfe
Submitter: Matthew Rolfe
Concentrations of E2 and T in cod plasma of female cod caged in Kollevåg measured by enzyme immunoassay.
Creators: None
Submitter: Karina Dale
The stressosome is composed of three proteins that assemble in the form of an icosahedron. Icosahedra can be modelled in different ways with different abstraction levels regarding the original stressosome structure. The pdf-figure introduces geometric modelling of the stressosome using origami and particle dynamics simulations.
Creator: Ulf Liebal
Submitter: Ulf Liebal
NMN formation by NamPT was measured using LC-MS as described in supplementary information
Creators: Ines Heiland, Dorothee Houry
Submitter: Ines Heiland
Data file for PLaSMo accesssion ID PLM_24, version 1
Creators: BioData SynthSys, Jonathan Massheder
Submitter: BioData SynthSys
Summary table of identified pigment binding proteins with relative shares in % and calculations of total amount of pigment binding proteins in the different data sets.
Creators: None
Submitter: Jana Kalvelage
Summary of identified ribosomal proteins of P. cordatum.
Creators: None
Submitter: Jana Kalvelage
Content:
- Nuclear protein fractions: NSP, NMP and NTP R1-R3 (Peptide counts)
- Summary nuclear proteins geLC
- Cellular protein fractions: CSP, CMP R1-R3 (Peptide counts)
- Summary cellular proteins geLC
- Summary nuclear protein fractions NSP R1-R3 (iBAQs)
- Summary cellular protein fractions CSP R1-R3 (iBAQs)
- 15 columns annotation
- Final summary of protein data
- Prediction results
- Annotation (biological processes and categories)
Tab color: raw data, green; summarized data, orange; final ...
Creators: None
Submitter: Jana Kalvelage
Creator: Jake Schissel
Submitter: Jake Schissel
Parameters used in maxQuant analysis
Creator: Malte Herold
Submitter: Malte Herold
Overview of the quality control for the RNAseq short read data before quality filtering of the reads
Creator: Malte Herold
Submitter: Malte Herold
Overview of the quality control for the RNAseq short read data after quality filtering of the reads
Creator: Malte Herold
Submitter: Malte Herold
Overview for quality control of mapping statistics, after mapping processed reads to reference genomes
Creator: Malte Herold
Submitter: Malte Herold
Overivew of RNAseq and proteomics samples with respective accessions to access the raw data on ENA or PRIDE respectively.
Creator: Malte Herold
Submitter: Malte Herold
This file contains description of all model parameters and corresponding references
Creators: Alexey Kolodkin, Hans V. Westerhoff
Submitter: Alexey Kolodkin
Creator: Lorenzo Tagliazucchi
Submitter: Lorenzo Tagliazucchi
Creator: Lorenzo Tagliazucchi
Submitter: Lorenzo Tagliazucchi
Creator: Lorenzo Tagliazucchi
Submitter: Lorenzo Tagliazucchi
Supplementary information file from Chew et al. PNAS 2014, including full model description for Arabidopsis Framework Model v1, model simulations and experimental validations.
Creators: Andrew Millar, Yin Hoon Chew
Submitter: Andrew Millar
Supplementary File 1 - Merged ITAG/PGSC Phureja DM gene models. Archive containing GTF, CDS and peptide fasta files for merged ITAG and PGSC gene models for S. tuberosum Group Phureja DM genome v4.04
1 file with legends 4 files with figures 2 files with tables
Data file for PLaSMo accesssion ID PLM_32, version 1
Creators: BioData SynthSys, Chris Davey
Submitter: BioData SynthSys
Creator: Franco du Preez
Submitter: Franco du Preez
Liver samples (salt water sampling) - Identification of compounds based on the LipidBlast database.
Columns: Compound 8.60_759.5784n Compound ID GPCho(12:0/22:1) Accepted? Adducts M+H, M+Na Formula C42H82NO8P Score 51,1 Fragmentation Score 62,1 Mass Error (ppm) 0,808672852 Isotope Similarity 94,59106017 Theoretical Isotope Distribution 100 - 47 - 12.5 - 2.39 - 0.367 Link http://nonlinear.com/redirect/outbound?p=lipidblast¶m=GPCho%2812%3A0%2F22%3A1%29 Description GPCho(12:0/22:1) Neutral mass (Da) ...
Creators: Zdenka Bartosova, Jon Olav Vik, Per Bruheim, Thomas Harvey, Sahar Hassani
Submitter: Zdenka Bartosova
Muscle samples (salt water sampling) - Identification of compounds based on the LipidBlast database.
Columns: Compound 8.60_759.5784n Compound ID GPCho(12:0/22:1) Accepted? Adducts M+H, M+Na Formula C42H82NO8P Score 51,1 Fragmentation Score 62,1 Mass Error (ppm) 0,808672852 Isotope Similarity 94,59106017 Theoretical Isotope Distribution 100 - 47 - 12.5 - 2.39 - 0.367 Link http://nonlinear.com/redirect/outbound?p=lipidblast¶m=GPCho%2812%3A0%2F22%3A1%29 Description GPCho(12:0/22:1) Neutral ...
Creators: Zdenka Bartosova, Jon Olav Vik, Per Bruheim, Thomas Harvey, Sahar Hassani
Submitter: Zdenka Bartosova
_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP1012-finalG/
Creator: Marko Petek
Submitter: Marko Petek
Raw proteomics data for S. thermosulfidooxidans samples
Creator: Malte Herold
Submitter: Malte Herold
Symmetric mean absolute percentage error per sample graph for the 40 independent samples
Creators: None
Submitter: Niels Zondervan
The file contains complete agenda of the SEEK users meeting , 26-27 March 2012 in Berlin
Creator: Olga Krebs
Submitter: Olga Krebs