Data files

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3421 Data files visible to you, out of a total of 5622

This file contains the R-script to analyse single nuclei data previously processed with kallisto and bustools. The analyses utilizes the Seurat, harmony and RNAvelocity package.

Data for Raman microspectroscopy in publication: Microbial-induced calcium carbonate precipitation: An experimental toolbox for in situ and real-time investigation of micro-scale pH evolution

Creator: Jennifer Zehner

Submitter: Jennifer Zehner

Metabolite profiles after 24h incubation with different ratios of HSD11B1 and AKR1C3 transfected HEK293 cells.

No description specified
No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

Samples underwent size exclusion chromoatography

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

No description specified

Creator: Natalia Gebara

Submitter: Natalia Gebara

Raw MS data files of the comparison of Sulfolobus solfataricus grown on either caseinhydrolysate or D-glucose. The numbers represents the fractions collected from the HPLC run (e.g. 22 indicates that this sample was collected from 21 min to 22 min). For MS analysis every two fractions were combined, indicated by double numbers (e.g. 80-81: combined fractions 80 and 81). Furhter all combined fractions were run twice on the MS. Zip archive. Requires the supplementary .z01, .z02 and .z03 files for ...

Supplementary file required by main Zip archive file for file extraction.

Supplementary file required by main Zip archive file for file extraction.

Supplementary file required by main Zip archive file for file extraction.

Umbrella study for all RNAseq rawdata Separate projects can be accessed under "component projects"

Raw data of Figure 5, main text

Raw data of Figure 3, main text

Raw data of Figure 4, main text

No description specified

Data file for PLaSMo accesssion ID PLM_24, version 1

Creators: BioData SynthSys, Jonathan Massheder

Submitter: BioData SynthSys

Report of the Data Management Foundry Workshop, 19th-20th of March, 2012, Vienna, Austria

Supplementary material for "Mass spectrometry proteomic and network enrichment analysis to track FOLFOX response in drug resistant ovarian carcinoma"

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_07_MergeEvi-dry/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_02_FieldTrials/_S_02_2020/_A_01_jun20-wet/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P1_SPv1TransientExp/_A_TransientSPv11andSPv12-GCMS/

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P1_SPv1TransientExp/_A_SPv10EaDActAnalysis-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_03-Centrifuge/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_01_ns-dsRNA_trans/_A_02_CLC-RNASeq/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_02_FieldTrials/_S_01_2019/_A_01_jun19-wet/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_02_FieldTrials/_S_02_2020/_A_01_jun20-wet/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_07_dec2016/_A_03_dec2016-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_04_DE_divers-R/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_05_jun2016/_A_03_jun2016-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_07_dec2016/_A_03_dec2016-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_01_ns-dsRNA_trans/_A_02_CLC-RNASeq/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P1_SPv10T0andT1/_A_SP10T0Analysis-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P1_SPv10T0andT1/_A_SP10T1Analysis-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P1_SPv10T2andT3/_A_SPv10T2Analysis-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P1_SPv10T2andT3/_A_SPv10T3Analysis-GCMS/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-oldG-DE/_A_00_SxP_photos-phenotyping/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP10-oldG-DE/_A_00_SxP_photos-phenotyping/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_05_jun2016/_A_03_jun2016-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_06_splitter_BLAST-dry/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_06_oct2016/_A_01_oct2016-phenotyping/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_08_SelTargetsA-dry/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_01_TargetSelect/_A_08_SelTargetsA-dry/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_03-Centrifuge/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_GAtreat/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_03_dsRNAprod/_A_04_prod-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_03_dsRNAprod/_A_04_prod-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_03_dsRNAprod/_A_04_prod-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_04_stages-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_03_jun2017-qPCR/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/_S_02_metagenome_resp/_A_05_extr_reads-rcf/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/reports/RNAseq_reports/

Creators: None

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/

Creator: Marko Petek

Submitter: Marko Petek

Repository for code used in data analysis (mainly for RNAseq) and for generating summary tables and overviews.

Files for the reference genomes utilized in the analysis are summarised in this repository.

Tutorial given at the Reproducible and Citable Data and Models Workshop, Warnemunde September 14th-16th 2015.

One example of a ReStoRunT sheet.

Creators: None

Submitter: Wolfgang Müller

No description specified
No description specified

Resulting data from the modelling workflow, see associated publication.

Columnwise datamatrix of reactions, gene identifiers, substrates and products. The direction of reactions is not given.

Creator: Sebastian Curth

Submitter: Sebastian Curth

RNA processing and degradation is initiated by endonucleolytic cleavage of the target RNAs. In many bacteria, this activity is performed by RNase E which is not present in Bacillus subtilis and other Gram-positive bacteria. Recently, the essential endoribonuclease RNase Y has been discovered in B. subtilis. This RNase is involved in the degradation of bulk mRNA suggesting a major role in mRNA metabolism. However, only a few targets of RNase Y have been identified so far. In order to assess the ...

Creators: None

Submitter: Leif Steil

No description specified

Creator: Theresa Kouril

Submitter: Theresa Kouril

RNA-Seq mapping results (part1): Sulfolobus solfataricus P2 grown on casaminoacids and d-glucose, mapped using bowtie2 against reference sequence of Sulfolobus solfataricus P2 (NBCI, see other data files of experiment).

Creators: Stefan Albaum, Andreas Albersmeier (CeBiTec, University of Bielefeld), Jörn Kalinowski (CeBiTec, University of Bielefeld)

Submitter: Stefan Albaum

RNA-Seq mapping results (part2): Sulfolobus solfataricus P2 grown on casaminoacids and d-glucose, mapped using bowtie2 against reference sequence of Sulfolobus solfataricus P2 (NBCI, see other data files of experiment).

Creators: Stefan Albaum, Andreas Albersmeier (CeBiTec, University of Bielefeld), Jörn Kalinowski (CeBiTec, University of Bielefeld)

Submitter: Stefan Albaum

No description specified

The aim of the exposure was to study the effects of activation of peroxisome proliferator-activated receptors (PPARs) in Atlantic cod (Gadus morhua), by injecting the fish with the compounds WY-14,643 and GW501516. Using luciferase reporter assay in vitro, we have shown that WY-14,643 activate Atlantic cod Ppara1 and Ppara2, while GW501516 activate Ppara1, Ppara2, and Pparb. The experimental set-up was as follows: Immature cod were injected at day 0 and day 4 with either high dose (40 mg/kg ...

Creators: None

Submitter: Marta Eide

RNA-Seq raw data: Sulfolobus solfataricus P2 grown on casaminoacids and d-glucose.

Creators: Stefan Albaum, Andreas Albersmeier (CeBiTec, University of Bielefeld), Jörn Kalinowski (CeBiTec, University of Bielefeld)

Submitter: Stefan Albaum

WT 110901_SN865_B_L006_R1_GQC-28- ATCACG.fastq.gz 100 19.624.852 1,29

llumina fastq format 4 lines for each sequence: 1- Unique identifier, with the following format: @::::#/ 2- Sequence (A, T, C ,G or N (undetermined) only) 3- Orientation (always forward without mapping) 4- Quality value for each base, corresponding to a Phred-like score encoded in ASCII format, with an offset of of 33 (e.g. “J” gives a value of 41) and is in accordance with sanger FASTQ format. The sequence file is compressed ...

RNAseq data file, Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/samples_ELOVL2/splicing/elovl2.splicing.txt

An example of a JERM-compliant template for RT-PCR data

This template was taken from the GEO website (http://www.ncbi.nlm.nih.gov/geo/info/spreadsheet.html) and modified to conform to the SysMO-JERM (Just enough Results Model) for transcriptomics.

TRK1 and TRK2

Creator: Clara Navarrete

Submitter: The JERM Harvester

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