Data files

1289 Data files visible to you, out of a total of 2095

Data file for PLaSMo accesssion ID PLM_1045, version 1

Measurements of PAH metabolites in bile in fish caged in Kollevåg.

Creator: Karina Dale

Contributor: Karina Dale

Contains training data and model with addition of the NoxE reaction
6h, 24h and 48h metabolite concentration data as well as calculated oxygen concentrations assuming no diffusion limit through the biofilm layer

Creator: Niels Zondervan

Contributor: Niels Zondervan

Data file for PLaSMo accesssion ID PLM_74, version 1

Data file for PLaSMo accesssion ID PLM_42, version 1

Creators: BioData SynthSys, Jonathan Massheder

Contributor: BioData SynthSys

Contains the estimated oxygen concentration and metabolite concentrations as wel as the model with addition of an oxygen inhibition parameter.
Results: Addition of the oxygen inhibition term does not improve the modell with the current parameter set

Creators: None

Contributor: Niels Zondervan

Data file for PLaSMo accesssion ID PLM_2, version 1

Data file for PLaSMo accesssion ID PLM_24, version 1

Creators: BioData SynthSys, Jonathan Massheder

Contributor: BioData SynthSys

Data file for PLaSMo accesssion ID PLM_11, version 2

Filtering of data in Perseus and t-test between conditions
Perseus save file

Experimental data set for the kinetic characterisation of PFK

Experimental data set for the kinetic characterisation of PGI

Kinetic characterisation of PGK. Expermental data for enzyme reaction rates with increasing concentrations of ATP, ADP, BPG and 3PG.

Experimental data set for the kinetic characterisation of PGK

Simulation results of PGK experimental data for ADP, ATP, 3PG and BPG saturation.

PGK yeast with recycling of ATP

Creator: Jacky Snoep

Contributor: Jacky Snoep

PGK yeast without recycling of ATP

incubations with yeast enzymes at 30C

No description specified
No description specified

Experimental data for the phosphoglycerate mutase (EC 5.4.2.12) activity.

Phosphorylation site of the HPr protein detected ba mass spectromety

Creators: Michael Hecker, Joerg Stuelke

Contributor: Leif Steil

Experimental data set for the kinetic characterisation of PK

PMA1

Creator: Paul Heusden

Contributor: The JERM Harvester

Data file for PLaSMo accesssion ID PLM_1045, version 1

TRK1, TRK2

Creator: Silvia Petrezselyova

Contributor: The JERM Harvester

PPZ1

Creator: Paul Heusden

Contributor: The JERM Harvester

overview of sysmo-LAB2

Creator: Bas Teusink

Contributor: Bas Teusink

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

Relative protein expression of the proteins Cyp3a and Mt in cod from the Kollevåg study

Creators: None

Contributor: Karina Dale

No description specified

Creator: Joerg Stuelke

Contributor: Leif Steil

List of protein identified proteins in SPINE experiment.

Creators: Joerg Stuelke, Uwe Voelker

Contributor: Leif Steil

Representation of all prepared 2D PAGE analyses of cytosolic proteins of Clostridium acetobutylicum growing continuously at pH 5.5, 5.3, 5.1, 4.9 and 4.7.

All spots and identified proteins of Clostridium acetobutylicum growing at steady-state pH 5.7 (acidogenesis) and pH 4.5 (solventogenesis), respectively, using 2D PAGE and Maldi-TOF analysis. The focus were cytosolic proteins with an isoelectric point bewteen 4 and 7 as well as a molecular weight of 180-10 kDa.

Maxquant output.

Proteomics data comparing LXX cultures cultivated on mineral and in continuous culture:
mineral samples:
LNU-LXX9-Si00-14B-P-B-Pr
LNU-LXX9-Si00-14B-P-C-Pr
LNU-LXX9-Si00-14B-P-D-Pr
conitnuous culture samples:
LNU-LXX9-Si00-CnA-P-B2-Pr
LNU-LXX9-Si00-CnA-P-B3-Pr
LNU-LXX9-Si00-CnA-P-B4-Pr
LNU-LXX9-Si00-CnA-P-B5-Pr
LNU-LXX9-Si00-CnA-P-B6-Pr
LNU-LXX9-Si00-CnA-P-B7-Pr

This template is a JERM compliant spreadsheet for use with gel electrophoresis data. It is in the style of the JERM MASTER template with worksheets for metadata, organism_sample, instrument and data. To conform to MIAPE-GE all worksheets are mandatory.
A detailed description of MIAPE-GE is available from http://www.psidev.info/miape/MIAPE_GE_1_4.pdf

Comparative proteomics of S. solfatricus grown on either L-fucose or D-glucose.

This is an Excel template for Mass Spec data that contains all the necessary MIAPE metadata fields. It was derived from examples on the PRIDE website (PRoteomics IDEntifications database http://www.ebi.ac.uk/pride/)

An example of a blank data sheet for Mass spectrometry data. This is not SysMO specific, but it is an example of MIAPE compliant data.

The shreadsheet contains macros to help you annotate your data with terms from controlled vocabularies and ontologies

An example of a completed data sheet for Mass spectrometry data. This is not SysMO specific, but it is an example of a MIAPE compliant data format taken from the PRIDE website (http://www.ebi.ac.uk/pride).

Protein copy number estimates, Mean and SD based on multiple proteomics experiments.
Compatible with internal and external metabolite measurements for Growth curve A.
Used as training data for the model

Creator: Niels Zondervan

Contributor: Niels Zondervan

These files contain the output results from Phenyx searching, providing all necessary information for matching MS data with protein database.

This file contains the results from proteome analysis of Sulfolobus solfataricus grown on Caseinhydrolysate as carbon source (growth on D-glucose served as reference condition).

This document outlines our plans for making it easier to publish assets from SEEK to enable people from outside the consortium to see them.

Creator: Katy Wolstencroft

Contributor: Katy Wolstencroft

No description specified
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