Data files

1087 Data files visible to you, out of a total of 1631

The abscissa of the plots shows the percentage of aerobiosis that is a physiological measure for oxygen availability (http://www.ncbi.nlm.nih.gov/pubmed/11844770).

1) Grey Boxes: Enzymes & Reactions
blue lines/symbols: flux in mmol per gramm dry cell weight an hour
red lines/symbols: mRNA levels

2) White Boxes: Intracellular and extracellular metabolites
blue lines/symbols: concentration of the metabolites (extracellular: mM, intracellular: AU)

3) Yellow Boxes:
Aggregated Quantities as yield,
...

Master file, aggregates metabolite concentrations inside and outside the cell, protein copy number and flux estimates for metabolites in the core model. Based on all internal metabolite concentrations, external metabolite concentrations from growth curve data, flux of glucose, lactate and acetate based on growth curve data and protein copy number data for enzyme concentrations. Combines absolute and relative measurements and metabolomics measurements from different experiment to get an as complete
...

Creator: Niels Zondervan

Contributor: Niels Zondervan

. L. lactis (NZ9000), E. faecalis (V538) and S. pyogenes (M49) wild type strain and their ldh- mutants were grown in batch cultures at 37°C in anaerobic 96 wells plates in either TH-broth supplemented with 0.5% (w/v) yeast (THY) or a chemically defined medium for LAB (pH 7.4) (CDM-LAB (10)). Both media were buffered with either 100 mM MES buffer or 100 mM MOPS buffer for growth at pH 6.5 and 7.5 respectively.

Steady state concentrations of extracellular metabolites in yeast Saccharomyces cerevisiae anaerobic chemostat at D = 0.1 h-1 on minimal medium. All metabolite concentrations are in mmol/L(R) except CO2, which is in parts of the partial pressure.

Steady state concentrations of intracellular metabolites in yeast Saccharomyces cerevisiae anaerobic chemostat at D = 0.1 h-1 on minimal medium. All metabolite concentrations are in mmol/L(CV).

Steady state metabolic fluxes measured in glucose-limited chemostat of Saccharomyces cerevisiae at D = 0.1 h-1 growing on minimal medium. Fluxes are: glucose, ethanol, glycerol, acetate, succinate, pyruvate, lactate, citrate, malate, a-ketoglutarate, fumarate

No description specified

Creator: Silvia Petrezselyova

Contributor: JERM

Heterologous Expression of LDHs from different lactic acid bacteria in Escherichia coli DH5α.
Assessment of kinetic parameters of LDH to include in a catabolic model .

Heterologous Expression of LDH from L.actis (MG1363) in E. coli DH5α.
Assessment of kinetic parameters of LDH to include in a catabolic model

Creator: Wayne Aubrey

Contributor: Wayne Aubrey

Meeting location map

Creator: Olga Krebs

Contributor: Olga Krebs

none

Creator: Silvia Petrezselyova

Contributor: JERM

TRK1, TRK2

Creator: Silvia Petrezselyova

Contributor: JERM

AFG3, AKR1, BRP1, COG6, ERG6, HRK1, LST7, NHX1, PEP5, PIG1, PTK2, RCK2, RCY1, REF2, RIC1, RTS1, SGF11, SAP185, SKY1, SNC2, SUR2,

Creator: Silvia Petrezselyova

Contributor: JERM

Untargeted and targeted metabolic analysis on T. b. brucei 427 grown under oxidative stress with methylene blue has been carried out. This work has been completed with 11 bio-reps and found significant metabolic changes as you can see in the IDEOM file attached. 'Comparison' tab in the data spread sheet shows heat maps and fold change analysis regarding different metabolite levels (T: T brucei, TMB: T. brucei exposed to methylene blue, numbers: time points, 0, 5, 60 & 120min). If you double click
...

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

SysMo2:
Intra- and extracellular metabolome data of the chemostat experiments: nitrogen limitation, nitrogen limitation+ NaCl, nitrogen limitation + glucose

Creator: Hanna Meyer

Contributor: Hanna Meyer

Intracellular metabolome analysis of S. solfataricus P2 grown on caseinhydrolysate or D-glucose as sole carbon source.
Samples were analyzed with GC-MS. CoA derivatives were analyzed with LC-MS.

Comparative GC-MS based metabolomics of S. solfataricus growing on either L-fucose or D-glucose. CoA derivatives were analysed via HPLC-MS

This Excel template is the general (master) template for any type of metabolomics data. It can be used as it is, or extended and modified to create a more specific templates for particular technologies and assay types.

Metall Stress

Creator: Susanne Gerber

Contributor: JERM

The figure contains information necessary to understand the mathematical model of experiments in BSA115. In these experiments sigB response is artificially initiated by the addition of IPTG while sigB is downstream of a Pspac promoter. The figure shows a flow-chart diagram that combines three hypotheses to explain experiments. It contains the ODEs and the fit of the respective models to the data.

This files contains the parameter values, life-times, half-lives and errors associated with modeling the decay of the transcriptome, based on 3 models described in Deneke et al. "Complex degradation processes lead to non-exponential decay patters and age-dependent decay rates of messenger RNA". PLoS One. 2013;8(2):e55442

mRNAs with decreased abundance in all replicates with an average fold change of at least 1.5

Creators: None

Contributor: Leif Steil

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS001_0

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS001_10

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS001_20

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS001_40

Creator: Dani Valverde

Contributor: JERM

MS001_5

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS001_60

Creator: Dani Valverde

Contributor: JERM

MS001_90

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS002_0

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS002_10

Creator: Dani Valverde

Contributor: JERM

MS002_20

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS002_40

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS002_5

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS002_60

Creator: Dani Valverde

Contributor: JERM

MS002_90

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS003_0

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS003_10

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS003_20

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS003_40

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS003_5

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS003_60

Creator: Dani Valverde

Contributor: JERM

MS003_90

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS004_0

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ andlong timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS004_10

Creator: Dani Valverde

Contributor: JERM

MS004_20

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS004_40

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS004_5

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS004_60

Creator: Dani Valverde

Contributor: JERM

MS004_90

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS005_0

Creator: Dani Valverde

Contributor: JERM

MS005_10

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS005_10

Creator: Dani Valverde

Contributor: JERM

MS005_20

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS005_40

Creator: Dani Valverde

Contributor: JERM

MS005_5

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS005_60

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS005_90

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS006_0

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS006_20

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS006_40

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS006_5

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS006_60

Creator: Dani Valverde

Contributor: JERM

MS006_90

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and long timing collection

Creator: Dani Valverde

Contributor: JERM

MS007_1

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS007_12

Creator: Dani Valverde

Contributor: JERM

MS007_4

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS007_6

Creator: Dani Valverde

Contributor: JERM

MS007_8

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS008_05

Creator: Dani Valverde

Contributor: JERM

MS008_12

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS008_4

Creator: Dani Valverde

Contributor: JERM

MS008_6

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS008_8

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS009_0

Creator: Dani Valverde

Contributor: JERM

MS009_12

Creator: Dani Valverde

Contributor: JERM

MS009_12

Creator: Dani Valverde

Contributor: JERM

MS009_4

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS009_6

Creator: Dani Valverde

Contributor: JERM

MS009_8

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 50mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS010_1

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS010_12

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS010_4

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS010_6

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS010_8

Creator: Dani Valverde

Contributor: JERM

MS011_1

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS011_12

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS011_4

Creator: Dani Valverde

Contributor: JERM

MS011_6

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS011_8

Creator: Dani Valverde

Contributor: JERM

MS012_1

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS012_12

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS012_4

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

MS012_6

Creator: Dani Valverde

Contributor: JERM

MS012_8

Creator: Dani Valverde

Contributor: JERM

Growth yeast with 0mM K+ and short timing collection

Creator: Dani Valverde

Contributor: JERM

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