Data files

1289 Data files visible to you, out of a total of 2095

Experimental data set for the kinetic characterisation of G3PDH

Kinetic characterisation of GAPDH. Expermental data for enzyme reaction rates with increasing concentrations of BPG, NADPH, NADP, GAP and Pi.

Experimental data set for the kinetic characterisation of GAPDH

Simulation results of GAPDH experimental data for BPG, NADPH, NADP, GAP, and Pi

GCN4

Creator: Paul Heusden

Contributor: The JERM Harvester

This data file shows results from the different chemostat experiments.Gene expression rates are presented.

This template is for recording genome data from the NimbleGen platform.
This template was taken from the GEO website (http://www.ncbi.nlm.nih.gov/geo/info/spreadsheet.html) and modified to conform to the SysMO-JERM (Just enough Results Model) for transcriptomics.
Using these templates will mean easier submission to GEO/ArrayExpress and greater consistency of data in SEEK.

Data sheet from the Neves et al JBC, 2002 publication. Used as a test data set for data upload.

Creator: Jacky Snoep

Contributor: Jacky Snoep

Experimental data set for the kinetic characterisation of the glucose transport reaction

Violin plot of the metabolic control of model parameters on the flux through PFK (as a proxy for flux through glycolysis) based on a 100.000 Latin Hypercube samples from the parameter space (range 0.001-100 for Km values and 0.001-1000 for Vmax values).

Creators: None

Contributor: Niels Zondervan

Shows the correlation in metabolic control between parameters.
The plot shows central carbon metabolis basically consist of a few control hubs of reactions of which the parameters are correlated. In other words, just the reaction network combined with allosteric control and equilibrium constants impose some constrains on possible parameter value combinations that lead to certain behaviour (such as the flux and concentrations measured in vivo/vitro).

Creators: None

Contributor: Niels Zondervan

Contains the raw output of the global sensitivity analysis, can be used as input for plotting using the R script "plotLocalGlobalSensitivity1.5.R" associated to the same asset

Creators: None

Contributor: Niels Zondervan

Glucose pulsed L. lactis with 20 mM glucose in 100 mM MES buffer at pH 6.5 and followed intracellular metabolites in time

L. lactis was grown in LAB medium, strongly concentrated and glucose-pulsed in a MES buffer. Intracellular metabolite concentration is followed in time.

Glucose pulsed S pyogenes with 5 mM glucose in 100 mM MES buffer at pH 6.5 and followed intracellular metabolites in time

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

No description specified

Creator: Margrete Solheim

Contributor: Margrete Solheim

Measurement of by-product formation rates, substrate consumption rates and extracellular concentrations of cAMP under aerobic batch conditions with glucose as substrate.

Measurement of by-product formation rates, substrate consumption rates and extracellular concentrations of cAMP under anaerobic batch conditions with glucose as substrate.

L. lactis cultures were grown at different dilution rates in glucose-limited chemostat conditions and were analyzed with respect to physiological parameters. Amino acid consumption, glucose consumption and production of fermentation products were measured in steady-state conditions,

Creator: Martijn Bekker

Contributor: Martijn Bekker

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