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3421 Data files visible to you, out of a total of 5622

Pteridines checked for Pan-assay interference compounds with the FAF-Drugs4 webserver (https://fafdrugs4.rpbs.univ-paris-diderot.fr/, last checked August 2020 and Lagorce et al. (2015) Nucleic Acids Res. 43, W200–207). Archive of PAINS filtering and ADME-Tox prediction results from FAF-Drugs4 run performed April 2019 with compound SMILES as input: applied_filters.txt: list of filters used; compound.sdf, accepted.sdf, intermediate.sdf, rejected.sdf, covalent_inhibitors.sdf and pains.sdf: compound ...

No description specified

Results of gas chromatography of fatty acid composition of feeds used in Study "GSF1: Salmon feed-switch experiment vegetable and fish oil 2015-2016", https://fairdomhub.org/studies/144.

Feed samples are identified by their EWOS feed number. Fatty acids are identified by ChEBI ID. Numbers in table are mass percentage of lipid fraction.

Details on recipes, pellet size etc for each feed ID are in https://fairdomhub.org/data_files/1308.

(The above clarifications required some detective work, which ...

This is the fatty acid profile data from the freshwater portion of the feed switch trial. The last column has the sample ID eg: D0_MA-L-1/9_6 (Day 0, MA- Marine oil, L-liver, 1/9 sept 1, fish number 6

Fatty acid Systematic Name C14:0 Myristic acid myristin-syre C16:0 Palmitic acid palmitin-syre C16:1n7 Palmitoleic palmitolein-syre C17:0 C17:1 C18:0 stearic acid stearin-syre 18:1n9c oleic acid olje-syre C18:2n6c linoleic acid linolsyre C20:1 eicosenoic acid C18:3n3 linolenic acid linolensyre C20:2 ...

Fatty acid Systematic Name

C14:0 Myristic acid myristin-syre C16:0 Palmitic acid palmitin-syre C16:1n7 Palmitoleic palmitolein-syre C17:0 C17:1 C18:0 stearic acid stearin-syre 18:1n9c oleic acid olje-syre C18:2n6c linoleic acid linolsyre C20:1 eicosenoic acid C18:3n3 linolenic acid linolensyre C20:2 eicosadienoic C22:1 cetoleic acid cetolein-syre C20:3n3 eicosatrienoic acid C20:4n6 arachidonic acid arakidon-syre ARA C22:2 C20:5n3 eicosapentaenoic acid EPA C24:1 nervonic acid C22:5n3 docosapentaenoic ...

FBA result of flux distribution in butanol producing e.coli strain, which designed using RobOKoD.

Kinetic characterisation of FBPAase. Expermental data for enzyme reaction rates with increasing concentrations of DHAP and GAP.

Simulation results of FBPAase of experimental data for DHAP and GAP saturation

_p_RNAinVAL/_I_01_LabTrials/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_03_Omics/

Creator: Marko Petek

Submitter: Marko Petek

The file contains FeaturePlots of 4 different cardiomyocyte markers (Actn2, Tnnc1, Actc1 and Ryr2) to demonstrate how annotation of clusters needs to be based on several markers and approaches, which in the aggregate allow for more reliable conclusions/results.

FASTA file of representative sequences for operational taxonomic units in gut microbiota analyses from feed-switch experiment at Solbergstrand Sept 2015.

(Knut Rudi --> Jon Olav Vik 20160126, email subject "metadata for alle fisk".)

File contents look like this:

OTU_1 1..446 -GTCC---GCCCTACGGGAT... OTU_2 1..446 -GTCC--GCCC-TACGGGAT... ... OTU_439 1..472 ----ATGTCACCTACGGGAT...

Gut microbiota analysis of the fish whose gross phenotypes are listed in https://fairdomhub.org/data_files/1244. Besides identification of the fish, the data are a 130 x 435 matrix showing amounts of operational taxonomic units (OTUs), one row per fish and one column per OTU (https://en.wikipedia.org/wiki/Operational_taxonomic_unit). Sequences that characterize each OTU are in https://fairdomhub.org/data_files/1317. Amounts are measured as the number out of 2000 sequences examined that contain a ...

Path to this file: orion:~jonvi/genosysfat/SRS_lakselever_pilot.sf3 Attempt at workaround because the "Remote URL" field only accepts http, https, ftp: ftp://10.209.0.221/mnt/users/jonvi/genosysfat/SRS_lakselever_pilot.sf3

This file resides on the "orion" server (currently 10.209.0.221) at Cigene, which is only reachable from within NMBU network, e.g. via vpn.nmbu.no (as username@nmbu.no).

It is a 190 MB binary file to be viewed e.g. by Scaffold, http://www.proteomesoftware.com/products/scaffold/download. ...

List of 40 proteins as targets for pilot proteomics analysis of feed-switch samples (of liver, I presume).

E-mail from Simen Rød Sandve to Morten Skaugen 2015-08-11:

On Tue, Aug 11, 2015 at 10:01 AM, Simen Rød Sandve wrote: Please find attached an excel table with 40 proteins of interest (names, annotation, and protein sequence). I know we mentioned 20 proteins as a nice number to aim for in the targeted analyses – but we couldn't really seem to agree on a smaller subset . Please see if its ...

Spreadsheet of weight, length and sex of fish sampled after feed switch between vegetable and marine oil, in September 2015 (freshwater) and January 2016 (seawater).

Spreadsheet columns are:

  • Date (YYYY-MM-DD)
  • Day (day zero is the day before first feeding with new feed)
  • Inputter (person entering data into Excel)
  • Tank (1, 2, 4, 5 with Atlantic salmon, 3 and 6 with rainbow trout)
  • Section (tanks were divided in half using perforated walls)
  • Treatment (explained in sheet "treatments")

...

FASTA file of representative sequences for operational taxonomic units in gut microbiota analyses from feed-switch experiment at Solbergstrand January 2016.

Gut microbiota analysis of fish sampled in january 2016. The data is found in row 335-548 and downwards (Sheet 1). The first 16 colums contain information about the fish, and the following columns (From R to AJO) each represent an OTU (Operational taxonomic unit) with the given taxonomy for each OTU presented in the bottom row. Sequencing depth was kept at 13000 sequences per sample, thus the numbers presented in the OTU columns represent the number of sequences matching the specific OTU from the ...

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Creator: Thomas Rimpf

Submitter: Thomas Rimpf

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Creator: Thomas Rimpf

Submitter: Thomas Rimpf

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Creator: Thomas Rimpf

Submitter: Thomas Rimpf

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Creator: Thomas Rimpf

Submitter: Thomas Rimpf

pulse acetic acid: 70mM (2x), 80mM, shift to 4.5, pulse acetic acid: 70mM

acetic acid addition

step experiment: 50mM, 70mM, 100mM, 120mM

pulse 200mM

No description specified

Creator: Thomas Rimpf

Submitter: Thomas Rimpf

Proteomics from MCADD and control individuals' fibroblasts.

Data file for PLaSMo accesssion ID PLM_64, version 1

Data file for PLaSMo accesssion ID PLM_64, version 3

Data file for PLaSMo accesssion ID PLM_64, version 4

Data file for PLaSMo accesssion ID PLM_64, version 1

Data file for PLaSMo accesssion ID PLM_64, version 3

Data file for PLaSMo accesssion ID PLM_64, version 4

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Data file for PLaSMo accesssion ID PLM_9, version 1

No description specified

Creator: Runyu Liang

Submitter: Runyu Liang

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Creator: Runyu Liang

Submitter: Runyu Liang

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Creator: Runyu Liang

Submitter: Runyu Liang

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Creator: Runyu Liang

Submitter: Runyu Liang

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Creator: Runyu Liang

Submitter: Runyu Liang

No description specified

Creator: Runyu Liang

Submitter: Runyu Liang

No description specified

Creator: Runyu Liang

Submitter: Runyu Liang

This pdf file contains all figures of the article "Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mice" in high resolution.

Information connecting RNA seq fastq-files to corresponding fish ID/exposure regime

Creators: Karina Dale, Pål A. Olsvik

Submitter: Karina Dale

Data file for PLaSMo accesssion ID PLM_30, version 1

This .csv file contains the filtered datset of the anaerobic to aerobic transition. Values are shown if they show a statistically significant change relative to the 0 minute transcriptional profile (t-test p<0.05 and 2-fold cut-off).

This .csv file contains the filtered datset of the aerobic to anaerobic transition. Values are shown if they show a statistically significant change relative to the 0 minute transcriptional profile (t-test p<0.05 and 2-fold cut-off).

Very simple unrealistic values for Fisetin kinetics (Km). For use in a simple graphical model.

Creator: Hannah O'Keefe

Submitter: Hannah O'Keefe

This data contains fish data such as fish abundance, fish community structure data, fish species data obtained in the study, fish productivity and also fish length-weight relationships.

Microarray data at end of day (ED) and end of night (EN) in 4, 6, 8, 12, and 18h photoperiods.

Excel sheet contains:

  • flux distribution solution from best iteration cluster
  • quality of the fit (experimental MIDs vs. simulated MIDs)
  • Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach

Excel sheet contains:

  • flux distribution solution from best iteration cluster
  • quality of the fit (experimental MIDs vs. simulated MIDs)
  • Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach

Excel sheet contains:

  • flux distribution solution from best iteration cluster
  • quality of the fit (experimental MIDs vs. simulated MIDs)
  • Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach

This .csv file shows FNR activity at different aerobiosis levels

Columns a_old Desired aerobiosis level (Aerobiosis units or %AAU) Bgal_activity Average FNR reporter activity (Miller units) Bgal_STDEV STDEV of FNR reporter activities (Miller units) rDOT(μM) Dissolved oxygen tension (μM) DCW DCW (g/L) [acetate] Extracellular acetate concentration (mM) Qacetate Acetate flux (mmoles/h/gDCW) a_new Actual aerobiosis level in sampled chemostat

A .pdf files showing graphs of FNR activity at varying aerobiosis levels

Top graph shows no acetate re-calibration Bottom graph shows data with acetate re-calibration

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/

Creator: Marko Petek

Submitter: Marko Petek

Excel workbook with included Read.Me sheet, including FW and DW biomass data derived from files linked elsewhere; a compilation of the rosette area and gas exchange data for every plant measured of the Col, lsf1 and prr7prr9 genotypes; statistical analysis across the experiments; and charts of the compiled data, some of which are presented as figure panels in the 2022 versions.

1222 patients

Summary of fragments that were used to construct an in silico pteridine library with corresponding fragment identifiers. Connections between the fragments are shown outside the colored boxes. Compounds were composed of a core fragment (C1-C3), an N10 fragment (N1-N7), a PABA fragment (P1-P10) and, for any PABA fragment except P8, P9 and P10, a tail fragment (T1E1-T7).

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

FASTQ file made from AB1 files. Source: /mnt/users/fabig/DigiSal/crispr_RNAseq/sanger/data/fq

Data file for PLaSMo accesssion ID PLM_6, version 1

Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar

Submitter: BioData SynthSys

  • Summary of functional categorization of all identified proteins of P. cordatum
  • Calculations of general functions (Fig. 5, left panel)
  • Calculations of nuclear functions (Fig. 5, right panel)
  • Categories in separate sheets

Tab color: Summarized data, purple; calculations, organge; functional categories, green

Creators: None

Submitter: Jana Kalvelage

Link to the repository for functional annotation

Additional data for the calculations and proteomic dataset of the catabolsim of P. vulgatus containing:

  1. Genome
  2. Proteomic data of the pathways and respiration
  3. Proteomic data of the transporter
  4. Proteomic data of the sus-like system
  5. Calculation of the cell dry weight and total cell count
  6. Calculations of the specific ATP yield
  7. Calculations of the product yields and biomass yields
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