Data files

1087 Data files visible to you, out of a total of 1631
No description specified

FBA result of flux distribution in butanol producing e.coli strain, which designed using RobOKoD.

Kinetic characterisation of FBPAase. Expermental data for enzyme reaction rates with increasing concentrations of DHAP and GAP.

Simulation results of FBPAase of experimental data for DHAP and GAP saturation

No description specified

Creator: Thomas Rimpf

Contributor: Thomas Rimpf

No description specified

Creator: Thomas Rimpf

Contributor: Thomas Rimpf

No description specified

Creator: Thomas Rimpf

Contributor: Thomas Rimpf

No description specified

Creator: Thomas Rimpf

Contributor: Thomas Rimpf

pulse acetic acid: 70mM (2x), 80mM,
shift to 4.5,
pulse acetic acid: 70mM

acetic acid addition

step experiment:
50mM, 70mM, 100mM, 120mM

pulse
200mM

No description specified

Creator: Thomas Rimpf

Contributor: Thomas Rimpf

This .csv file contains the filtered datset of the anaerobic to aerobic transition. Values are shown if they show a statistically significant change relative to the 0 minute transcriptional profile (t-test p<0.05 and 2-fold cut-off).

This .csv file contains the filtered datset of the aerobic to anaerobic transition. Values are shown if they show a statistically significant change relative to the 0 minute transcriptional profile (t-test p<0.05 and 2-fold cut-off).

Excel sheet contains:

- flux distribution solution from best iteration cluster
- quality of the fit (experimental MIDs vs. simulated MIDs)
- Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach

Excel sheet contains:

- flux distribution solution from best iteration cluster
- quality of the fit (experimental MIDs vs. simulated MIDs)
- Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach

Excel sheet contains:

- flux distribution solution from best iteration cluster
- quality of the fit (experimental MIDs vs. simulated MIDs)
- Sensitivity analysis for 95% flux parameter confidence interval using a Monte-Carlo approach

This .csv file shows FNR activity at different aerobiosis levels

Columns
a_old Desired aerobiosis level (Aerobiosis units or %AAU)
Bgal_activity Average FNR reporter activity (Miller units)
Bgal_STDEV STDEV of FNR reporter activities (Miller units)
rDOT(μM) Dissolved oxygen tension (μM)
DCW DCW (g/L)
[acetate] Extracellular acetate concentration (mM)
Qacetate Acetate flux (mmoles/h/gDCW)
a_new Actual aerobiosis level in sampled chemostat

A .pdf files showing graphs of FNR activity at varying aerobiosis levels

Top graph shows no acetate re-calibration
Bottom graph shows data with acetate re-calibration

Link to the repository for functional annotation

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