Data files
What is a Data file?Filters
Data file for PLaSMo accesssion ID PLM_12, version 1
Creators: BioData SynthSys, Robert Muetzelfeldt
Submitter: BioData SynthSys
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
Creators: None
Submitter: Patrick Becker
TRK1, TRK2, ENA1-5
Creator: Guido Hasenbrink
Submitter: The JERM Harvester
TRK1, TRK2, NHA1, ENA1-5
Creator: Jaromir Zahrádka
Submitter: The JERM Harvester
TRK1, TRK2, TOK1, NHA1, ENA1-5
Creator: Jaromir Zahrádka
Submitter: The JERM Harvester
Creator: Tomas Fiedler
Submitter: The JERM Harvester
The four treatment groups were Control (0 mg CPM/kg, with DMSO), 0.5 mg CPM/kg, 4.2 mg CPM/kg and 23.2 mg CPM/kg. Each treatment group consisted of 9 fish. These fish were sampled from 3 different tanks per treatment, with n=9 per treatment. A total of 36 samples were sequenced. For each sample, about 50 million 150 bp paired-end reads were generated.
Creator: Pål A. Olsvik
Submitter: Marta Eide
For each modeled 3D structure of LHD (see Part 1: 3D structure modeling for LDH enzymes) was computed electrostatic potential by using the UHBD program. The files are in GRD format (binary) and can be visualized with the graphical programs as CHIMERA or VMD.
Creator: Anna Feldman-Salit
Submitter: Anna Feldman-Salit
Monitoring of end products ethanol, acetone, butanol, acetate and butyrate during master fermentation of Clostridium acetobutylicum at the steady state pH values 5.5, 5.3, 5.1, 4.9 and 4.7.
Creator: Holger Janssen
Submitter: Holger Janssen
Monitoring of end products in mM of ethanol, acetone, butanol, acetate and butyrate during master fermentation of Clostridium acetobutylicum at the steady state pH values 5.7 (acidogenesis) and 4.5 (solventogenesis).
Creator: Holger Janssen
Submitter: Holger Janssen
Experimental data set for the kinetic characterisation of ENO
Creators: Dawie van Niekerk, Jacky Snoep
Submitter: Dawie van Niekerk
Identified gene targets of deregulated miRNAs were used as input. Ontology and pathway GO terms with an adjusted p-value < 0.05 were considered significantly overrepresented
Creator: Julia Scheel
Submitter: Julia Scheel
This .csv file contains the entire transcriptional dataset of the aerobic to anaerobic transition. The values shown are the gene-expression ratio at 2, 5, 10, 15 and 20 minutes relative to the 0 minute timepoint.
Creator: Matthew Rolfe
Submitter: The JERM Harvester
This .csv file contains the entire transcriptional dataset of the anaerobic to aerobic transition. The values shown are the gene-expression ratio at 2, 5, 10, 15 and 20 minutes relative to the 0 minute timepoint.
Creator: Matthew Rolfe
Submitter: The JERM Harvester
Data file for PLaSMo accesssion ID PLM_52, version 1
Creators: BioData SynthSys, Richard Adams
Submitter: BioData SynthSys
binary data file from "Hobo" environment multi-sensor + data logger, located next to the plants used in the experiment. Usually read in HOBOware software, free from Onsetcomp.com. Useful temperature record. Though light levels can usefully show changes they are not well calibrated.
Creator: Yin Hoon Chew
Submitter: Andrew Millar
Creators: Joerg Stuelke, Rick Lewis, joseph newman
Submitter: Leif Steil
Measured in liver of Atlantic cod exposed to PAHs and PFASs
Creator: Karina Dale
Submitter: Karina Dale
Measurement of Gst and Cat enzyme activity in liver of fish caged in Kollevåg.
Creator: Karina Dale
Submitter: Karina Dale
Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [hexane-2,5-dione] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [hexane-2,5-dione] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. This is a file that can be opened with the Origin Software for analysis and contains data copied in manually from the xlsx.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [hexane-2,5-dione] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [hexane-2,5-dione] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. These are the raw data obtained directly from the Synergy UV-Vis Spectrophotometer.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [NDK] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [NDK] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. This is a file that can be opened with the Origin Software for analysis and contains data copied in manually from the xlsx.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [NDK] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [NDK] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. These are the raw data obtained directly from the Synergy UV-Vis Spectrophotometer.
Creators: Gudrun Gygli, Felix Ott
Submitter: Gudrun Gygli
The ArcA phosphorylation state was determined for mutants with linear respiratory chain at defined aerobiosis levels.
Creator: Katja Bettenbrock
Submitter: Katja Bettenbrock
by-product formation rates and glucose uptake rates of mutants with linear electron transport chain at different aerobiosis levels
Creator: Katja Bettenbrock
Submitter: Katja Bettenbrock
Gene expression levels in mutants with linear ETC were determined by RealTime RT-PCR
Creator: Katja Bettenbrock
Submitter: Katja Bettenbrock
Very simple unrealistic values for Everolimus kinetics (Km). For use in a simple graphical model.
Creator: Hannah O'Keefe
Submitter: Hannah O'Keefe
Creator: Sebastian Curth
Submitter: Sebastian Curth
transcriptome, glucose, biomass data inside
Creator: Sebastian Curth
Submitter: Sebastian Curth
Data file for PLaSMo accesssion ID PLM_30, version 1
Creators: BioData SynthSys, Andrew Millar, Andrew Millar
Submitter: BioData SynthSys
Output files of phosphate probe binding on the surface of LDH from lactococcus lactis type 1. File with extension XPLOR can be visualized with a program VMD to identify the most favorable position for the phosphate binding. This relates to the Model "Part 4".
Creator: Anna Feldman-Salit
Submitter: Anna Feldman-Salit
An example of MIHCSME describing live cell imaging HepG2 -GFP reporter line.
Creator: Rohola Hosseini
Submitter: Rohola Hosseini
An example of MIHCSME describing live cell imaging HepG2 -GFP reporter line, describing assay with cell death staining.
Creator: Rohola Hosseini
Submitter: Rohola Hosseini
An example template for screen published in IDR (idr0022, screenA).
Creator: Rohola Hosseini
Submitter: Rohola Hosseini
An example template for screen published in IDR (idr0002, screenA).
Creator: Rohola Hosseini
Submitter: Rohola Hosseini
An example template for screen published in IDR (idr0022, screenB).
Creator: Rohola Hosseini
Submitter: Rohola Hosseini
An example template describing compound screen on HepG2 CHOP-GFP reporter .
Creator: Rohola Hosseini
Submitter: Rohola Hosseini
Excel sheet template : concentrations of intracellular metabolites
Creators: Olga Krebs, Katy Wolstencroft
Submitter: Olga Krebs
Excel template for metadata required by ENA to submit sequence data
Creator: Olga Krebs
Submitter: Olga Krebs
Experimental data for 3PG conversion to fructose-6-phosphase in reconstituted systems of gluconeogenesis of S. solfataricus
Creators: Jacky Snoep, Theresa Kouril
Submitter: Jacky Snoep
Creator: Cornelius Erbelding
Submitter: Cornelius Erbelding
Creator: Aaron Laier
Submitter: Aaron Laier
Contains growth curve data such as Glucose uptake rate, lactate and acetate production at different time points. Growth curve A was used train the model with external glucose concentration as well as external lactate, acetate concentration and estimated glucose acetate and lactate flux
Creator: Niels Zondervan
Submitter: Niels Zondervan
Creator: Sebastian Curth
Submitter: Sebastian Curth
extracellular metabolites concentrations [mM] measured by 1H-NMR i
Creator: Hanna Meyer
Submitter: Hanna Meyer