Data files

What is a Data file?
3421 Data files visible to you, out of a total of 5622

Data file for PLaSMo accesssion ID PLM_12, version 1

Creators: BioData SynthSys, Robert Muetzelfeldt

Submitter: BioData SynthSys

No description specified
No description specified
No description specified
No description specified
No description specified

it can be used to construct the GO network

It can be used to construct the GO network

TRK1, TRK2, ENA1-5

Creator: Guido Hasenbrink

Submitter: The JERM Harvester

TRK1, TRK2, NHA1, ENA1-5

Creator: Jaromir Zahrádka

Submitter: The JERM Harvester

TRK1, TRK2, TOK1, NHA1, ENA1-5

Creator: Jaromir Zahrádka

Submitter: The JERM Harvester

No description specified

Creator: Tomas Fiedler

Submitter: The JERM Harvester

The four treatment groups were Control (0 mg CPM/kg, with DMSO), 0.5 mg CPM/kg, 4.2 mg CPM/kg and 23.2 mg CPM/kg. Each treatment group consisted of 9 fish. These fish were sampled from 3 different tanks per treatment, with n=9 per treatment. A total of 36 samples were sequenced. For each sample, about 50 million 150 bp paired-end reads were generated.

Creator: Pål A. Olsvik

Submitter: Marta Eide

For each modeled 3D structure of LHD (see Part 1: 3D structure modeling for LDH enzymes) was computed electrostatic potential by using the UHBD program. The files are in GRD format (binary) and can be visualized with the graphical programs as CHIMERA or VMD.

Monitoring of end products ethanol, acetone, butanol, acetate and butyrate during master fermentation of Clostridium acetobutylicum at the steady state pH values 5.5, 5.3, 5.1, 4.9 and 4.7.

Monitoring of end products in mM of ethanol, acetone, butanol, acetate and butyrate during master fermentation of Clostridium acetobutylicum at the steady state pH values 5.7 (acidogenesis) and 4.5 (solventogenesis).

Experimental data set for the kinetic characterisation of ENO

Identified gene targets of deregulated miRNAs were used as input. Ontology and pathway GO terms with an adjusted p-value < 0.05 were considered significantly overrepresented

Creator: Julia Scheel

Submitter: Julia Scheel

This .csv file contains the entire transcriptional dataset of the aerobic to anaerobic transition. The values shown are the gene-expression ratio at 2, 5, 10, 15 and 20 minutes relative to the 0 minute timepoint.

This .csv file contains the entire transcriptional dataset of the anaerobic to aerobic transition. The values shown are the gene-expression ratio at 2, 5, 10, 15 and 20 minutes relative to the 0 minute timepoint.

Data file for PLaSMo accesssion ID PLM_52, version 1

binary data file from "Hobo" environment multi-sensor + data logger, located next to the plants used in the experiment. Usually read in HOBOware software, free from Onsetcomp.com. Useful temperature record. Though light levels can usefully show changes they are not well calibrated.

No description specified

Measured in liver of Atlantic cod exposed to PAHs and PFASs

Creator: Karina Dale

Submitter: Karina Dale

Measurement of Gst and Cat enzyme activity in liver of fish caged in Kollevåg.

Creator: Karina Dale

Submitter: Karina Dale

Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [hexane-2,5-dione] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [hexane-2,5-dione] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. This is a file that can be opened with the Origin Software for analysis and contains data copied in manually from the xlsx.

Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [hexane-2,5-dione] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [hexane-2,5-dione] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. These are the raw data obtained directly from the Synergy UV-Vis Spectrophotometer.

Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [NDK] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [NDK] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. This is a file that can be opened with the Origin Software for analysis and contains data copied in manually from the xlsx.

Activity (initial rates) of Gre2p were measured followng NADPH absorbance at different substrate [NDK] concentrations. Initial rates are calculated (mM/s) and plotted as a function of [NDK] to allow fitting with a enzyme kinetic model, e.g. Michaelis Menten. These are the raw data obtained directly from the Synergy UV-Vis Spectrophotometer.

The ArcA phosphorylation state was determined for mutants with linear respiratory chain at defined aerobiosis levels.

by-product formation rates and glucose uptake rates of mutants with linear electron transport chain at different aerobiosis levels

Gene expression levels in mutants with linear ETC were determined by RealTime RT-PCR

Very simple unrealistic values for Everolimus kinetics (Km). For use in a simple graphical model.

Creator: Hannah O'Keefe

Submitter: Hannah O'Keefe

transcriptome, glucose, biomass data inside

Data file for PLaSMo accesssion ID PLM_30, version 1

Output files of phosphate probe binding on the surface of LDH from lactococcus lactis type 1. File with extension XPLOR can be visualized with a program VMD to identify the most favorable position for the phosphate binding. This relates to the Model "Part 4".

An example of MIHCSME describing live cell imaging HepG2 -GFP reporter line.

An example of MIHCSME describing live cell imaging HepG2 -GFP reporter line, describing assay with cell death staining.

An example template for screen published in IDR (idr0022, screenA).

An example template for screen published in IDR (idr0002, screenA).

An example template for screen published in IDR (idr0022, screenB).

An example template describing compound screen on HepG2 CHOP-GFP reporter .

Excel sheet template : concentrations of intracellular metabolites

Creators: Olga Krebs, Katy Wolstencroft

Submitter: Olga Krebs

Excel template for metadata required by ENA to submit sequence data

Experimental data for 3PG conversion to fructose-6-phosphase in reconstituted systems of gluconeogenesis of S. solfataricus

No description specified
No description specified
No description specified

Creator: Aaron Laier

Submitter: Aaron Laier

Contains growth curve data such as Glucose uptake rate, lactate and acetate production at different time points. Growth curve A was used train the model with external glucose concentration as well as external lactate, acetate concentration and estimated glucose acetate and lactate flux

No description specified

extracellular metabolites concentrations [mM] measured by 1H-NMR i

Powered by
(v.1.14.2)
Copyright © 2008 - 2023 The University of Manchester and HITS gGmbH