Data files

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3421 Data files visible to you, out of a total of 5622

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

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Batch sample publishing

Batch sample publishing

Batch sample publishing

Creators: None

Submitter: Jake Schissel

Data file for PLaSMo accesssion ID PLM_23, version 1

Creators: BioData SynthSys, Robert Muetzelfeldt

Submitter: BioData SynthSys

No description specified

Creator: Alexey Kolodkin

Submitter: Alexey Kolodkin

WT (Cy5) vs. trxB (Cy3)_stationary growth phase_DyeFlip

Creator: Daniel Hönicke

Submitter: Daniel Hönicke

WT (Cy3) vs. trxB (Cy5)_stationary growth phase

Creator: Daniel Hönicke

Submitter: Daniel Hönicke

WT (Cy3) vs. trxB (Cy5)_exp. growth phase

Creator: Daniel Hönicke

Submitter: Daniel Hönicke

HSD11B1 was inhibited by CBX and the effect on the conversion of cortisone and 11KA4 in HSD11B1/AKR1C3 incubations was followed.

Experiment conducted in early April 2014 Intact rosette is pictured, with plant number and genotype in handwritten labels, and ruler for scale. Then dissected leaves are organised in sequence of age, if necessary with small cuts to let them lie flat.

Areas are then measured in image processing.

Intact rosette is pictured, with plant number and genotype in handwritten labels, and ruler for scale. Then dissected leaves are organised in sequence of age, if necessary with small cuts to let them lie flat. Areas are then measured in image processing.

E. faecalis was gucose-pulsed after resuspension in 100 mM MES buffer at pH 6.5 Intra- and extracellular metabolites concentrations were followed in time

Creator: Martijn Bekker

Submitter: Martijn Bekker

Growth curves of the PA1008 strain of Pseudomonas aeruginosa with multiple concentrations of meropenem. Data set 1 is used to parametrise the model in our project. This consists of three biological replicates, each with three technical repeats. The meropenem concentrations used for this data set were: 0, 2, 4, 10, 20, 40, 200 ug/ml.

Growth curves of the PA1008 strain of Pseudomonas aeruginosa with multiple concentrations of meropenem. Data set 1 is used to parametrise the model in our project. This consists of three biological replicates, each with three technical repeats. The meropenem concentrations used for this data set were: 0, 0.5, 1, 5, 10, 50, 100 ug/ml.

just cell counts, the area of the grains is separate.

raw data of Figure 2

Python script allowing the user to define the names of the input files to be used. Together with "wrapper.py" this script requires input files to be located in a folder called "input" in the same directory.

NHA1 ENA1-5 TOK1 TRK1 TRK2

Creator: Silvia Petrezselyova

Submitter: The JERM Harvester

Complete list of differentially expressed proteins between sub-anatomical regions. Non significant results were filtered out.

Creators: None

Submitter: Julia Scheel

Complete list of differentially expressed proteins between sub-anatomical regions. Non significant results were filtered out.

Creators: None

Submitter: Julia Scheel

CML dictionary for compchem conventions allowing representation of thermophysical properties of deep eutectic solvents (DES) with CML. Examples of thermophysical properties are: density, viscosity, conductivity and water activity

CML unit dictionary for mili pascal * second and microSiemens per cm

Data file for PLaSMo accesssion ID PLM_64, version 1

PhD thesis research by Joost W Aerts under supervision of Hans V. Westerhoff, Rob J van Spanning and Pascale Ehrenfreund

In this folder one has the: thesis summary a pdf of the thesis supplemental material per chapter, for chapters 3, 4, 6, and 7

At the GenoSysFat startup meeting 2015-04-22, Dominic Nanton of EWOS described the feeds they made for GenoSysFat.

Describes recipes with linseed oil (LNO) and palm oil (PO) to provide the 18:3n-3 precursor to EPA and DHA and match saturation of 100% fish oil (FO) control diet at ca 0.7 mass% EPA+DHA.

Page 2: Overview Page 3-4: Description of feeds. Feed no., Code, Initial fish weight (g), Feed size (mm), Fish number (3000), Feed (kg) Page 5-7: Feed formulations. Feed number, Feed name, Feed size ...

Data file for PLaSMo accesssion ID PLM_6, version 1

Creators: BioData SynthSys, Alexandra Pokhilko, Andrew Millar

Submitter: BioData SynthSys

No description specified

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/

Creator: Marko Petek

Submitter: Marko Petek

_p_SUSPHIRE/_I_T21_SXPsysbio/_S_P4_SxP12-newG-DE/

Creator: Marko Petek

Submitter: Marko Petek

Data file for PLaSMo accesssion ID PLM_24, version 1

Creators: BioData SynthSys, Jonathan Massheder

Submitter: BioData SynthSys

Data file for PLaSMo accesssion ID PLM_42, version 1

Creators: BioData SynthSys, Jonathan Massheder

Submitter: BioData SynthSys

This is a pdf showing a graph of the dissolved oxygen tension of the culture during an aerobic to anaerobic transition.

This is a pdf showing a graph of the dissolved oxygen tension of the culture during an anaerobic to aerobic transition.

The distribution of enzymes involved in oxidative Stickland reactions among archaea was estimated using BLAST searches (BLOSUM62) with the protein sequences of acetate-CoA ligase (EC 6.2.1.13, ACS), ketoisovalerate oxidoreductase (EC 1.2.7.7, BC-OR) and indolepyruvate oxdoreductase (EC 1.2.7.8, AR-OR) from Pyrococcus furiosus (Pfu) and Sulfolobus solfataricus (Sso) against all archaea. Positive results are indicated by a '+' (homologue found, e-value < 1e-20) and negative results by a '-' (no ...

Supplementary movie of the distribution of nuclear pores in the nuclear envelope of P. cordatum

Creators: None

Submitter: Jana Kalvelage

Raw data of the measurements obtained via DLS measurements. Can be opened with the Zetasizer software.

Raw data of the measurements obtained via DLS measurements. Can be opened with the Zetasizer software.

Raw data of the measurements obtained via DLS measurements. Can be opened with the Zetasizer software.

Batch sample publishing

Batch sample publishing

Simulation of double mutants and perturbations and time series samples using for Sample 1 only OE mutants of which we update the enzyme concentrations. For each second mutant the enzyme concentrations in case of OE and KO mutants in updated and the metabolite concentrations of the second sample are loaded in the model. Using this approach the model approximately predicts combinatorial effects of OE mutations with other mutations, perturbations and time series concentrations.

No description specified

Creator: Xiaokang Zhang

Submitter: Xiaokang Zhang

COBRA Matlab toolbox was used.

gadMorTrinity can be found at: https://doi.org/10.6084/m9.figshare.13067354.v1

Creator: Xiaokang Zhang

Submitter: Xiaokang Zhang

No description specified

Creator: Andrej Blejec

Submitter: Andrej Blejec

Contains a Jupyter notebook file that uses libroadrunner and tellurium to run all simmulations and analysis based on the 40 independent samples. The Readme.txt file contains information on how to recreate the complete modelling environment used for all simmulations and analysis using Anaconda.

Dynamics of extracellular metabolites (glc, pyr, suc, lac, gly, ac, etoh, fum, mal, cit, including loss of akg, g3p, 2pg, 3pg, r5p, f6p, g6p, 6pg) during glucose pulse. Glucose pulse was performed in anaerobically growing yeast Saccharomyces cerevisiae in steady state chemostat (D = 0.1 h-1) and transent concentrations of the extra- and intracellular metabolites from central carbon metabolism (e.g. glycolysis, PPP, glycerol, purines, etc) were measured.

Dynamics of intracellular metabolites (pyr, suc, fum, mal, akg, pep, g3p, 2pg, 3pg, cit, r5p, f6p, g6p, 6pg, ATP, ADP, AMP, UTP, GTP, inosine, NAD+, IMP, UDP, NADP+, CTP, AdenyloSuccinate, NADPH, trehalose) during glucose pulse. Glucose pulse was performed in anaerobically growing yeast Saccharomyces cerevisiae in steady state chemostat (D = 0.1 h-1) and transent concentrations of the extra- and intracellular metabolites from central carbon metabolism (e.g. glycolysis, PPP, glycerol, purines, ...

Dynamics of macromolecules (total RNA) during glucose pulse. Glucose pulse was performed in anaerobically growing yeast Saccharomyces cerevisiae in steady state chemostat (D = 0.1 h-1) and transent concentrations of the extra- and intracellular metabolites from central carbon metabolism (e.g. glycolysis, PPP, glycerol, purines, etc) were measured.

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