Data files

1114 Data files visible to you, out of a total of 1799

The pdf-file shows simulations of a hypothetical model of sigma factor competition. It simulates the dynamics that we can expect from the experiments and prepares for the analysis of the experimental data.
Analysis of sigma factor competition is based on a Lineweaver-Burk representation of RNApolymerase and competing sigma factors.

B. subtilis was grown in minimal media in a chemostat at different growth rates (µ= max, µ=0.1, µ=0.4) and in the presence of 1.2M NaCl (µ=0.1) with or without glycinebetaine. Here you'll find cell titers for every sample.

B. subtilis was grown in minimal media in a chemostat at different growth rates (µ= max, µ=0.1, µ=0.4) and in the presence of 1.2M NaCl (µ=0.1) with or without glycinebetaine. Here you'll find cell sizes for every sample.

B. subtilis was grown in minimal media in a chemostat at growth rate µ=0.1, with 1.2M NaCl and glycine betaine. Relative quantification for the proteome was done using metabolic labeling.

B. subtilis was grown in minimal media in a chemostat at growth rate µ=0.1, with 1.2M NaCl, without glycine betaine. Relative quantification for the proteome was done using metabolic labeling.

No description specified

batch fermatation - The transition from growing to non-growing Bacillus subtilis cells

No description specified

Array hybridisation was done at Roche Nimblegen Inc. It cannot be displayed over here.

batch fermatation - The transition from growing to non-growing Bacillus subtilis cells

BCN-RNAsample001

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample002

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample003

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample004

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample005

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample006

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample007

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample008

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample009

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample010

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample011

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample012

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample013

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample014

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample015

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample016

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample017

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample018

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample019

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample020

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample021

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample022

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample023

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample024

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample025

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample026

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample027

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample028

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample029

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample030

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample031

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample032

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample033

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample034

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample035

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

BCN-RNAsample036

Creator: Lina Patricia Barreto Parra

Contributor: The JERM Harvester

Data for Figs. 5D, 5E and Supp 7C in Chew et al. PNAS 2014
FW - fresh weight
DW - dry weight (i.e. after baking out all water)
SLA - specific leaf area (area per g mass), indicates leaf thickness
Indiv, data for individual leaves rather than rosette

Data for Figs. 2I, 2J, 2K in Chew et al. PNAS 2014
Fresh biomass, dry biomass (i.e. after baking out all water),
SLA - specific leaf area (area per g)

The same data are available on the BioDare resource, with additional experimental meta data on growth conditions.
BioDare ID 13790828881028, title "Physiology experiment using Col", the direct link is:
https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13790828881028

Data for Figs. 3D, 3E in Chew et al. PNAS 2014
Fresh biomass, dry biomass (i.e. after baking out all water),
SLA - specific leaf area (area per g)
Also FMv1 model simulation results.

The same data are available on the BioDare resource, with additional experimental meta data on growth conditions.
BioDare ID 13790837647786, title "Physiology experiment using Fei", the direct link is:
https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13790837647786

Data for Figs. 3A, 3B in Chew et al. PNAS 2014
Fresh biomass, dry biomass (i.e. after baking out all water),
SLA - specific leaf area (area per g)

Also contains model simulation data from the FMv1
The same data are available, with additional experimental meta data on growth conditions, from the BioDare resource:
BioDare experiment 13790834110003; title "Physiology experiment using Ler", the direct link is:
https://www.biodare.ed.ac.uk/robust/ShowExperiment.action?experimentId=13790834110003

Biomass weight during glucose pulse. Glucose pulse was performed in anaerobically growing yeast Saccharomyces cerevisiae in steady state chemostat (D = 0.1 h-1) and transent concentrations of the extra- and intracellular metabolites from central carbon metabolism (e.g. glycolysis, PPP, glycerol, purines, etc) were measured.

No description specified
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