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3421 Data files visible to you, out of a total of 5622

Data file for PLaSMo accesssion ID PLM_51, version 1

No description specified

Creator: Tomas Fiedler

Submitter: The JERM Harvester

Badly chosen substrate concentrations for an intital rate experiment give data that makes it difficult to fit with a kinetic model and judge the quality of the fit.

Very well chosen substrate concentrations for an intital rate experiment give data that makes it very easy to fit with a kinetic model and judge the quality of the fit.

Well chosen substrate concentrations for an intital rate experiment give data that makes it easy to fit with a kinetic model and judge the quality of the fit and use it as a basis for the final gold-round experiment.

An initial choice of 5 widely spaced substrates enables a first, rough estimate of Km to inform the design of first-round experiments.

Batch sample publishing

No description specified
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Batch sample publishing

Batch sample publishing

Raw data for Ac + St leaching experiments proteomics data, with Ac 10x inoculum sizing

Creator: Malte Herold

Submitter: Malte Herold

Batch sample publishing

No description specified

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

No description specified
No description specified

Batch sample publishing

Batch sample publishing

Batch sample publishing

Batch sample publishing

Contains the absolute copy number per locus tag during growth between 0.25 and 96hours of growth Growth in batch, cells attached to the bottom of the flask, non-aerated, non-stirred

Metabolic changes of 26 intracellular metabolites extracted from T. b. brucei 427 wild type and arginine kinase knockout cells exposed to methylene blue

Metabolic changes of 26 intracellular metabolites extracted from T. b. brucei 427 wild type and arginine kinase knockout cells under high pH stress (pH8.7)

Intracellular concentrations of 50 metabolites measured by LC-MS using isotope ratio based mass spectrometry technique

This mini-symposium, colocated at the ECMTB in Gothenburg, presents the state-of-the-art in computational methods for multicellular systems biology. It brings together developers and users of this software to identify common approaches and future challenges concerning multiscale integration, model specification, model exchange, scalability, workflow management as well as compliance to standards and guidelines. The session thus aims to provide an overview of the available modeling and simulation ...

Creator: Walter de Back, TU Dresden

Submitter: Lutz Brusch

The Table represents the simulation results of how the presence of phosphate ions (Pi) in the solution might affect the activity of four LDH enzymes. This includes the algorithmic analysis of the binding energies values computed by the GRID program (see Part 4, model) for each enzyme in presence and absence of FBP molecule at pH 6 and 7. The analysis was performed by using the algorithm proposed in Part 5, model.

Activity assays in cell free extracts of S. solfataricus grown on either L-fucose or D-glucose and activity assays with recombinant proteins

The excel spreadsheet about the inherency of the size dependency of optical properties at the nanoscale

Creator: Ioannis Metaxas

Submitter: Ioannis Metaxas

The excel spreadsheet about the inherency of the size dependency of optical properties at the nanoscale

Creator: Ioannis Metaxas

Submitter: Ioannis Metaxas

TbTryS activity was measured at 37°C in the in vivo-like buffer. All substrate stock solutions were prepared in the in vivo-like buffer and the pH was adjusted to 7.0. The assays were performed in a final volume of 2 ml and contained 0.2 mM NADH, 1 mM phosphoenolpyruvate, 4 units pyruvate kinase, 4 units L-lactate dehydrogenase, 0.17 µM TbTryS, 2.1 mM ATP and varying amounts of GSH, and Spd.

The file contains the initial rate measurements of TbTryS obtained under different substrate and product initial concentrations.

No description specified

Creators: None

Submitter: Flora D'Anna

No description specified

Creators: None

Submitter: Flora D'Anna

Data file for PLaSMo accesssion ID PLM_51, version 1

Agenda for the satellite data management tutorial of Synthetic Biology 2017.

Creator: Natalie Stanford

Submitter: Natalie Stanford

3rd ERASysAPP – EXCHANGE Day: Networking and Info Day for research projects of the first and second ERASysAPP calls

Creators: Olga Krebs, Katalin Zsuzsanna Nagy, Heide Marie Hess

Submitter: Olga Krebs

Final version of the Agenda: All Hands PALs meeting on 21-22 of May 2012 in Warnemünde/Rostock.

Creators: None

Submitter: Olga Krebs

Experimental data set for the kinetic characterisation of ALD

Biomass data for individual plants at day 35, fresh and dry weights, as well as mean and SD, from study Gibberellins 1

All of the above metadata in one file

The purpose of this is using it in ModelXChange.

Creator: Wolfgang Müller

Submitter: Wolfgang Müller

Contains for all samples, mean metabolite concentration and shows enzyme concentration used in model fitting and simmulations. Only metabolite present in the model are shown.

raw data OD600

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

amino acid auxotrophies as determined for S. pyogenes, E. faecalis, L. lactis and L. plantarum (ATCC, NC8, JDM1 and WCFS1) subsequent inoculation (3x) in CDM

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

raw data OD600 of amino acid auxotrophy exps S. pyogenes

Creator: Koen van Grinsven

Submitter: Koen van Grinsven

amino acid auxotrophy for streptococcus pyogenes in CDM-IMIKRO (not CDM-LAB) as function of final growth yield (OD600 at stationary phase) in 96well plates (200 ul culture)

Sulfolobus solfataricus P2 was cultivated on 1 % Caseinhydrolysate. Samples of the culture supernatants were taken at regular intervalls and analyzed by GC-MS. To evaluate the stability of amino acids under cultivation conditions an additional non-inoculated control culture was also analyzed.

No description specified

Creator: Margrete Solheim

Submitter: Margrete Solheim

No description specified
No description specified

Creators: John Raedts, Wouter Kuit

Submitter: John Raedts

_p_RNAinVAL/_I_01_LabTrials/_S_07_dec2016/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_04_Stages/_A_03_stages-RNAisol/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_05_jun2016/_A_02_jun2016-RNAisol/

Creator: Marko Petek

Submitter: Marko Petek

_p_RNAinVAL/_I_01_LabTrials/_S_09_jun2017/_A_02_jun2017-RNAisol/

Creator: Marko Petek

Submitter: Marko Petek

Content:

  • Compiled 15 columns annotation of P. cordatum (Dougan et al. 2022)
  • Summary of predicted unknown proteins of P. cordatum
  • Calculations of predicted unknown proteins of P. cordatum

Tab color: annotation, purple; unknowns, green

Creators: None

Submitter: Jana Kalvelage

S. pneumoniae Control1 DNA-Seq PE1

S. pneumoniae Control 1 DNA PE2

S. pneumoniae Control 2 DNA PE1

S. pneumoniae Control 2 DNA PE2

S. pneumoniae HPUra 1 DNA PE1

S. pneumoniae HPUra 1 DNA PE2

S. pneumoniae HPUra 2 DNA PE1

S. pneumoniae HPUra 2 DNA PE2

S. pneumoniae kanamycin DNA PE1

S. pneumoniae kanamycin DNA PE2

E. coli DNA-Seq Barcodes: control 1: GTGGCC control 2: GTTTCG Trimethoprim 1: CACTCA Trimethoprim 2: CAGGCG

E. coli RNA-Seq Barcodes: Control 1: AGTTCC Control 2: ATGTCA

E. coli RNA-Seq Barcodes: Trimethoprim 1: CCGTCC Trimethoprim 2: GTAGAG

S. pneumoniae RNA-Seq Barcodes: Control 1: CAGATC Control 2: ACTTGA

S. pneumoniae RNA-Seq Barcodes: HPUra 1: CAGATC HPUra 2: ACTTGA Kanamycin: AGTCAA

This document shows the ArcA phosphorylation levels at different aerobiosis units, measured using Phos-tag gels, western immunoblotting. Exposed films were quantitated using ImageJ and the results shown here.

Creator: Matthew Rolfe

Submitter: Matthew Rolfe

Collected PDB-files of homology models of alpha-tubulin, all based on T. thermophila tubulin PDB-ID 5ubq, chain A:

Includes models of the following dinitroaniline herbicide sensitive species (UniProt ID in brackets):

  • C. reinhardtii (P09204)
  • E. indica (O22347)
  • L. donovani (I3W8N6)
  • L. infantum (E9AGJ8)
  • L. major (Q4QGC5)
  • P. falciparum (P14642)
  • S. viridis (Q65C79)
  • T. brucei (Q4GYY5)
  • T. cruzi (Q27352)
  • T. gondii (P10873)
  • Z. mays (P14640)

Includes models of the following dinitroaniline ...

This archive contains all results of the PIPSA analysis run in zipped form. It contains the following subfolders:

  • apbs: Computed electrostatic potential grids, all log files and similarity matrices for the full protein and all sites.
  • pdb2pqr: PQR files: conversion results after processing uploaded PDB files with pdb2pqr
  • pdbs: Original uploaded PDB files

The following sites have been analyzed (provided are site center (based on T. cruzi model, Ca of the residue) and the sphere radius):

Blume ...

No description specified
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No description specified

Creator: Runyu Liang

Submitter: Runyu Liang

Quantitative proteomic analysis of Cyanothece ATCC51142 grown in 12L:12D light:dark cycles, using partial metabolic labeling and LC-MS analysis.

Raw data for Ac+St planktonic cells, leaching experiments with St 10x incoulum sizing

Creator: Malte Herold

Submitter: Malte Herold

No description specified

Creator: Maike Bartholomae

Submitter: Maike Bartholomae

Raw data for , Ac + St or Lf + St planktonic cells from leaching experiments

Creator: Malte Herold

Submitter: Malte Herold

The parameters A and B were estimated for the function f(x)=x⋅e^(B-Ax) and the AUC was calculated for the decay phase only. For OH-Midazolam the fourth replicate in the 2 weeks condition has an outlier in the measurement after six hours (more than 2SD above the mean of this condition) and was omitted for the AUC calculation as this could not be fitted to an exponential decay.

Creators: None

Submitter: Sebastian Höpfl

Pride project for raw and search data for AXX-Cn samples: LNU-AXX-Si00-CnB-P-B6ST-Pr_180min LNU-AXX-Si00-CnB-P-B7ST-Pr_180min LNU-AXX-Si00-CnB-P-B8ST-Pr_180min

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