Data files

1363 Data files visible to you, out of a total of 2258

SAP4, SAP155, SAP185, SAP190, NHA1, SIT4

Creator: Silvia Petrezselyova

Contributor: The JERM Harvester

Data sheet generated in Greifswald to measure the response of sigB activity in response to different media composition.

Creator: Ulf Liebal

Contributor: Ulf Liebal

No description specified

Creator: Praveen Kumar Sappa

Contributor: The JERM Harvester

No description specified

Creators: Alexander Ter Beek, Klaas Hellingwerf

Contributor: The JERM Harvester

This is the csv version of the file: 091016 quinones complete data magdeburg

This document contains data for quinone concentrations and ratios of ubichinon and menachinon.These data have been generated for analysis of MG1655 at steady-state conditions in Infors-Multifors-Bioreactors. All measurements have been done in Amsterdam at the group of Prof. Joost Teixeira de Mattos.

Duplicates of samples for quinones were taken after 20 hours of steady state conditions. Chemostat experiments were carried
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his document contains data for quinone concentrations and ratios of ubichinon and menachinon.These data have been generated for analysis of MG1655 at steady-state conditions in Infors-Multifors-Bioreactors. All measurements have been done in Amsterdam at the group of Prof. Joost Teixeira de Mattos.

Duplicates of samples for quinones were taken after 20 hours of steady state conditions. Chemostat experiments were carried out in Infors-Bioreactors at 0, 20, 50, 80, 100 and 120% aerobiosis. All data
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Creator: Dani Valverde

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

Strain BSA115 is grown until appr. OD 0.25 then expression of sigB is induced by the addition of IPTG. The extend of stress response is measured by the expression of lacZ via beta-Gal assay. The experiment lasts for appr. 400 min.

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

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Creator: Jost Ludwig

Contributor: The JERM Harvester

This Excel template is for use with affy transcriptomics data in Matrix table format. It was created from a template on the GEO web site (http://www.ncbi.nlm.nih.gov/geo/info/geo_affy.html) and modified to conform to the SysMO JERM for transcriptomics.

Data file for PLaSMo accesssion ID PLM_3, version 1

Creators: BioData SynthSys, Chris Davey

Contributor: BioData SynthSys

Data file for PLaSMo accesssion ID PLM_3, version 1

Creators: BioData SynthSys, Chris Davey

Contributor: BioData SynthSys

Data file for PLaSMo accesssion ID PLM_3, version 1

Creators: BioData SynthSys, Chris Davey

Contributor: BioData SynthSys

Data file for PLaSMo accesssion ID PLM_3, version 1

Creators: BioData SynthSys, Chris Davey

Contributor: BioData SynthSys

Output of the 3D-structures modeled by comparative modeling tool for LDH enzymes from four LABs (in the PDB format, tarred). Four LABs include Enterococcus faecalis, Lactococcus lactis, Streptococcus pyogenes and Lactobacillus plantarum. Output of the SEEK Model https://seek.sysmo-db.org/models/118.

The modeling was performed against a x-ray structure of LDH from B. stearothermophilis (template, PDH ID: 1LDN).

Data file for PLaSMo accesssion ID PLM_12, version 1

Creators: BioData SynthSys, Robert Muetzelfeldt

Contributor: BioData SynthSys

Contains relative metabolite concentrations for 40 samples based on technical triplicates. Medium and SD values were calculated and used for 1000 sampled simmulations (sampling from the measurement distribution per metabolite) per sample.
Also contains annotion to link metabolite concentrations and protein fold change measurements for OE and KO mutants to the model as well as external glucose, acetate and lactate concentrations. A SBtab like format was used to easily load the MEAN and SD metabolite
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Creators: None

Contributor: Niels Zondervan

Contains the FC metabolite concentration values data and a R script to perform PCA, generate hetamaps and a correlation network.

Creators: None

Contributor: Niels Zondervan

Timecourses of GLC (starting at 5 mM) and LAC, PYR, GLY in the closed system.

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