m1=0.54; m2=0.24; m3=0.2; m4=0.2; m5=0.3; m6=0.25; m7=0.5; m8=0.1; m9=1; m10=0.3; m11=1; m12=1; m13=0.32; m14=0.28; m15=0.31; m16=0.5; m17=0.3; m18=1; m19=0.2; m20=1.2; m21=0.2; m22=2; m23=1; m24=0.405; m25=0.28; m26=0.14; m27=0; m28=0; p1=0.4; p2=0.27; p3=0.1; p4=0.268; p5=1; p6=0.44; p7=0.3; p8=0.7; p9=0.4; p10=0.36; p11=0.23; p12=30; p13=0.4; p14=0.45; p15=0.05; p16=0; n0=0.4; n1=1.8; n2=0.7; n3=0.06; n4=0; n5=3.4; n6=1.25; n7=0.2; n8=0.42; n9=0.26; n10=0.18; n11=0.71; n12=2.3; n13=0; n14=0; q1=0.8; q2=0.5; q3=2.9; q4=0.6; g1=0.1; g2=0.28; g3=0.4; g4=0.91; g5=0.3; g6=0.3; g7=0.18; g8=0.14; g9=0.3; g10=0.7; g11=0.7; g12=0.5; g13=0.6; g14=0.17; g15=0.4; g16=0.2; g17=0; a=2; b=3; c=3; d=2.5; e=2; f=3; g=2; h=2; i=3; j=3; k=3; l=2; m=2; n=1; o=2; s=3; p=1; dawn1=0; dusk1=3; dawn2=9; dusk2=12; period=24; dusk=12; day_numb=4; t1=[0 2 4 6 8 10 12 14 16 18 20 22 24 26 28 30 32 34 36]; cLm6=[3.79 1.36 0.4 0.055 0.009275 0.004335 0.022135 0.025 0.155 1.4 4.81 5.49 4.735 1.17 0.395 0.065 0.005155 0.002805 0.0016465]/4.67; cLm12=[4.67 1.9 0.69 0.1 0.01 0.0032 0.0025 0.001285 0.00579 0.065 0.715 2.785 4.285 1.48 0.665 0.135 0.009405 0.00225 0.00154]/4.67; cLm18=[3.07 2.02 0.835 0.23 0.045 0.006315 0.00675 0.009195 0.03 0.115 0.09 0.595 2.5 2.44 0.93 0.285 0.045 0.00931 0.00487]/4.67; t2=[0 4.0190 8.2687 12 16.26350935 20.299 23.773]; Cl_m=[1 0.1221 0.004 0.001 0.004 0.1386 1.0098]; % wt LD LHY Farre05 %Cl_m_79=[0.633634374 0.2475 0.2574 0.118983192 0.066 0.0726 0.227915116 0.633634374]; Cl_m_Kieron=[1 0.406852248 0.147751606 0.021413276 0.002141328 0.000685225 0.000535332 0.000275161 0.001239829 0.01391863 0.153104925 0.596359743 0.86509636]; % wt LD LHY Kieron t3=[0 2 4 6 8 10 12 14 16 18 20 22 24]; %Cl_m_Megan=[0.330026161 0.287523197 0.170062831 0.098909046 0.046149859 0.004802833 0.002650503 0.00887496 0.007361477 0.004616688 0.030730877 0.195102266 0.260808779]; %t3m=[0.25 1 2 4 7 9.75 11.75 12.33 13.5 15 18 21 23.75]; %Cl_p1=[0.474074074 0.518518519 1.185555498 0.681481481 0.342026559 0.266666667 0.297774092 0.237037037 0.15108206 0.133333333 0.15108206 0.312518861 0.62292729]; %t4=[0 1.41 3.76 5.64 8.46 11.28 12.22 13.16 15.06934637 17.86 20.68 23.97 24.44]; %Cl_p2=[0.62292729 0.814814815 0.711111111 0.342026559 0.079780219 0.122166093 0.044444444 0.103703704 0.755555556]; %t5=[0.44 1.85 4.67 8.9 11.72 12.20220573 13.6 16.42 24.88]; Cl_p_cca1=[0.31 0.72 1 0.74 0.54 0.336 0.18]; t55=[0 0.24 1.12 2.04 4.24 6 22]; %Ct_m_S=[0.096806814 0.123255233 0.430110785 0.99993022 0.75740988 0.57862019 0.478412376 0.378418307]; %t6=[1 4 7 10 13 16 19 22]; %Ct_m_M1=[0.212306955 0.135260076 0.388658699 0.999897271 0.672876074 0.477690648 0.296202445]; %Ct_m_M2=[0.296202445 0.130123617 0.452008355 0.782453857 0.600965654 0.409204534 0.236277095]; %Ct_m_M1_cl=[0.311611821 1.121460124 0.674588227 0.6283601 0.505085094 0.392083005 0.359552101]; %Ct_m_M2_cl=[0.359552101 1.308084786 0.763620176 0.648905934 0.475978495 0.337294114 0.294490292]; %t7=[0 4 8 12 16 20 24]; Cg_m=[0.49 0.49132948 1 0.034682081 0 0]; % wt LD GI t8=[1.1 5 9.2 13.20340865 17.30115603 21]; Cp5_m=[0.020408163 0.624489796 1 0.628624435 0.057142857 0]; %wt LD PRR5 t9=[5.0641 7.0556 9.0471 11.0386 13.0301 15.0785]; %Cp5=[0.0082 0.01478276 0.0123 0.0451 0.4305 1.004533469 0.774997613 0.3854 0.1148 0.0082 0.0123 0.01478276]; %t10=[1.083 3.080110388 5.074280737 7.182904705 9.006 11.1155846 13.11 15.10596789 17.1 19.152 21.147 23.08528148]; %Cg=[0.139784946 0.279569892 0.752995329 1 0.483870968 0.172043011]; %t11=[1.085 5.27 9.3 13.02 17.205 21.235]; Cp5_m_M=[0.060606061 0.078787879 1 0.878787879 0.272727273 0.115787716 0.145958722 0.090909091 0.067759636]; % wt LD PRR5 t12=[0 3.36 6.24 9.12 12.24 15.12 18.12158933 21.12136359 24.00479952]; %Ct=[0.091 0.0455 0.30085101 1.001 1.0101 0.655452729]; %t13=[1.16 5.075 9.135 13.05 17.11245745 21.025]; Ct_m_K=[0.361904762 0.371428571 0.685714286 1 0.514285714 0.49047619]; % wt LD TOC1 t14=[0.962 4.884 8.954 12.95 16.946 20.942]; Cz=[0.157894737 0.184210526 0.450453757 1 0.738719413 0.526315789]; % wt LD ZTL t15=[1.068 4.99669811 9.256 13.172 17.088 21.182]; %C9_m=[0.06 1.000449899 0.16 0.09 0.05 0.23 0.1 0.08]; %t16=[-1.644 1.294 7.17 10.334 22.54199969 28.64 34.29273929 48.07799996]; C9_mm=[0.06 1.000449899 0.16 0.09 0.05]; %wt LD PRR9 t16m=[-1.644 1.294 7.17 10.334 22.54199969]; C9_m=[1 0.55 0.15]; % Matsushika 00 t16=[1 3.3 14.4]; Cg_m_L=[0.037974684 0.177666694 0.348101266 0.297468354 0.265822785 1 0.670886076 0.456091601 0.076996994 0.040028831 0.056962025 0.044303797 0.044303797]; t17=[0 0.735391052 1.3 2.08 4.42 7.28 10.14 12 13.82 15.38 17.98 21.1 23.96]; %C9_m_D=[0.05 0.23 0.1 0.08]; %t18=[-1.458 4.64 10.293 24.08]; %C7_m=[0.113402062 0.463917526 1.00021254 0.845612233 0.432989691 0.350515464 0.092783505 0.030927835 0.092783505 0.546780644 0.649811732 0.403249633 0.382000151 0.216494845 0.20721393 0.248280301]; %t19=[-1.656 1.704 4.168 7.304 9.992 13.8 16.49314875 19.4 22.32091878 27.46729394 31.27492798 34.184 37.32 40.23722248 42.92491681 47.84997353]; %C7_mm=[0.113402062 0.463917526 1.00021254 0.845612233 0.432989691 0.350515464 0.092783505 0.030927835 0.092783505]; %wt LD PRR7 %t19m=[-1.656 1.704 4.168 7.304 9.992 13.8 16.49314875 19.4 22.32091878]; C7_m=[0.18 0.32 0.52 0.71 1 0.72 0.39 0.21 0.14 0.18]; t19n=[0 2.18 3.27 4.91 6.54 7.63 11.45 13.63 16.08 24]; %C7_m_D=[0.092783505 0.546780644 0.649811732 0.403249633 0.382000151 0.216494845 0.20721393 0.248280301]; %t20=[-1.679081217 3.46729394 7.27492798 10.184 13.32 16.23722248 18.92491681 23.84997353]; %C7=[0.064 0.312409987 1 0.85614952 0.793009458 0.224]; %t21=[0 4.342 8.183 12.358 16.366 20.207]; Ct_m_N=[0.186440678 0.169491525 0.279661017 1.000574383 0.974576271 0.644569385 0.56779661 0.610404851]; % wt LD TOC1 t22=[0 2.99 6.095 9.085 12.305 15.41 18.515 21.85]; %Ct_m_N1=[0.185339259 0.172413793 0.24137931 1.000264201 0.82790543 0.505747126 0.563218391 0.482758621 0.195402299]; %t23=[0 3.77 6.96 9.57 13.34 16.24 19.14 22.62743468 25.81]; %Cl_m_579=[0.4025 0.598 0.575459816 0.586950807 0.632918044 0.289562601 0.449089356 0.46]; %t24=[0 3.08 6.44 9.52 12.32 15.4 20.44 23.8]; %Cl_m_57=[0.2972859 0.2265625 0.1953125 0.296875 0.3359375 0.188959166 0.2578125 0.3671875]; %t25=[0 2.99 6.095 9.085 12.305 15.41 18.515 21.85]; %Cc_m_79=[1.3205 0.693760225 0.883959558 0.665 0.427922014 0.1805 0.57]; %t26=[0 4 8 12 12 16 20]; %Cl_mLL=[1 0.7115 0.1170 0.125 0.1154 0.3942 0.4712 0.5192 0.3365 0.1058 0.1827 0.1741 0.4712 0.5292 0.3077 0.1741 0.1837 0.5 0.4135 0.4912 0.2421]; %t27=[0 4 8 12 16 20 24 28 32 36 40 44 48 52 56 60 64 68 72 76 80]; %Ct_mLL=[0.24 0.259 0.318 1.23 0.606 0.44 0.20 0.17 0.39 0.587 0.596 0.337 0.23 0.289 0.50 0.933 0.577 0.394 0.251 0.25 0.529]; %t28=[0 4 8 12 16 20 24 28 32 36 40 44 48 52 56 60 64 68 72 76 80]; %Cl_sk2=[0.003316018 0.151467606 0.585378948 0.055234325 0.80849913 0.691075701 0.000164909 3.275441672 1.452356518 1.386231399 0.969255298]; %Cl_sk2=0.2/3.275*Cl_sk2; %t29=[9.5 10.5 11.5 12.5 13.5 14.5 15.5 16.5 17.5 18.5 19.5]; %t30=[0.96 3.36 5.28 7.68 13.44 13.47424209 15.36 17.28 20.64 24 24.48 25.44 27.36 31.68 36 37.03784011 37.92 40.8 49.44931951]; %Cl_pox=[0.469 0.642 0.901 0.975 0.704 0.556 0.568 0.272 0.111 0.222 0.185 0.654 0.975 0.988 1 0.951 0.605 0.309 0.704]; %Cl_mox=[0.835826533 0.924050633 1 0.987341772 0.721518987 0.759493671 0.544303797 0.569620253 0.620253165 0.746835443 0.759493671 0.671363575 0.772566811 0.646065831 0.936708861 0.671959972 0.87378455 0.860759494 0.632911392]; %t31=[-1.052 1.064 3.272 5.296978696 7.872 9.712779647 12.012]; %C9m=[0.118199288 1.000328677 0.358974359 0.397435897 0.294871795 0.115384615 0.08974359]; %t32=[-1.052 3.273108394 5.48 7.504 11.92070768 12 14.116 16.324 22.948]; %C9p=[0.116703094 0.620769612 0.670886076 1 0.455696203 0.342708516 0.166492993 0.113924051 0.116703094]; t33=[1.22 3.22 5.22 7.22 9.22 11.22 13.23 15.23 17.23 19.23 21.23 23.23 25.23 27.23 29.24 31.24 33.24 35.24 37.24 39.24 41.24 43.25 45.25 47.25 49.25 51.25 53.25 55.25 57.26 59.26 61.26 63.26 65.26 67.26 69.26 71.27 73.27 75.27 77.27 79.27 81.27 83.27 85.28 87.28 89.28 91.28 93.28 95.28 97.28 99.28 101.29 103.29 105.29 107.29 109.29 111.29 113.29 115.30 117.30 119.30 121.30 123.30 125.30 127.30 129.31 131.31 133.31 135.31 137.31 139.31 141.31 143.32 145.32 147.32 149.32]; CTlc=[1.45E+07 2.02E+07 2.70E+07 3.07E+07 3.15E+07 3.09E+07 2.90E+07 2.58E+07 2.24E+07 1.93E+07 1.83E+07 2.03E+07 2.27E+07 2.49E+07 2.53E+07 2.39E+07 2.10E+07 1.81E+07 1.65E+07 1.69E+07 1.82E+07 1.95E+07 2.03E+07 1.99E+07 1.85E+07 1.67E+07 1.53E+07 1.52E+07 1.59E+07 1.67E+07 1.74E+07 1.76E+07 1.68E+07 1.55E+07 1.43E+07 1.39E+07 1.43E+07 1.49E+07 1.51E+07 1.50E+07 1.48E+07 1.39E+07 1.32E+07 1.28E+07 1.28E+07 1.30E+07 1.32E+07 1.32E+07 1.28E+07 1.27E+07 1.23E+07 1.21E+07 1.21E+07 1.21E+07 1.22E+07 1.21E+07 1.20E+07 1.18E+07 1.19E+07 1.18E+07 1.16E+07 1.17E+07 1.15E+07 1.13E+07 1.11E+07 1.11E+07 1.10E+07 1.09E+07 1.11E+07 1.12E+07 1.11E+07 1.11E+07 1.11E+07 1.09E+07 1.09E+07]; % TOC1:LUC in lhy/cca1 in LL; raw data CTlcg=[4.54E+06 5.71E+06 8.42E+06 1.08E+07 1.15E+07 1.13E+07 1.00E+07 8.64E+06 7.39E+06 6.38E+06 5.79E+06 5.64E+06 5.91E+06 6.16E+06 6.19E+06 5.98E+06 5.64E+06 5.29E+06 4.98E+06 4.74E+06 4.51E+06 4.36E+06 4.19E+06 4.08E+06 3.94E+06 3.80E+06 3.64E+06 3.50E+06 3.45E+06 3.40E+06 3.36E+06 3.38E+06 3.30E+06 3.20E+06 3.10E+06 3.02E+06 2.95E+06 2.92E+06 2.91E+06 2.89E+06 2.87E+06 2.84E+06 2.81E+06 2.78E+06 2.75E+06 2.68E+06 2.63E+06 2.58E+06 2.52E+06 2.54E+06 2.49E+06 2.46E+06 2.42E+06 2.38E+06 2.36E+06 2.31E+06 2.30E+06 2.26E+06 2.25E+06 2.24E+06 2.22E+06 2.22E+06 2.18E+06 2.16E+06 2.15E+06 2.13E+06 2.09E+06 2.10E+06 2.07E+06 2.08E+06 2.05E+06 2.05E+06 2.04E+06 2.05E+06 2.07E+06]; % TOC1:LUC in lhy/cca1/gi in LL; raw data t = [0 day_numb*period]; %Solving the ODEs and draw traectories options=odeset('stat','off'); y0=[1 0.825 0.0774 0.01 0.416 0.25 0.056 0.0065 0.044 0.0238 0.393 0.323 0.093 0.119 0.35 0.075 0.019 0.24 0.1 0.054 0]; % y0=[0.7129 0.7888 0.1241 0 0.2885 0.2729 0.0523 0.0077 0.0553 0.0397 0.3459 0.2956 0.1388 0.1381 0.3316 0.0275 0.0084 0.2104 0.1582 0.024 0]; % wt 15:9 % y0=[1.067 0.846 0.015 0.01 0.554 0.186 0.062 0.0094 0.018 0.006 0.307 0.364 0.097 0.113 0.372 0.207 0.054 0.2 0.115 0.114 0]; % 6:18 % y0=[1.026 0.85 0.007 0.01 0.556 0.187 0.063 0.01 0.014 0.0045 0.307 0.37 0.096 0.11 0.374 0.23 0.06 0.193 0.119 0.124 0]; % 3:21 % y0=[1.104 0.84 0.038 0.01 0.527 0.192 0.06 0.008 0.028 0.012 0.322 0.35 0.097 0.114 0.366 0.163 0.04 0.22 0.1 0.095 0]; % 9:15 % y0=[0.4972 0.6995 0.2127 0.01 0.2121 0.3049 0.0457 0.0074 0.049 0.068 0.2866 0.2626 0.2312 0.1536 0.2911 0.0138 0.0052 0.1625 0.2602 0.0129 0]; % 18:6 % y0=[0 0.8459 0.023 0.01 0 0.3428 0.0548 0 0.0017 0.0099 0.3 0.3583 0.3447 0.1838 0.3504 0.0027 0.0016 0.1765 0.3471 0 0]; % 6:18 lhy/cca1 % y0=[0 1 0 0.01 0 0.3 0 0 0 0.05 0.34 0.25 0.17 0 0 0 0 0.21 0.25 0 0]; % 9:15 lhy/cca1 % y0=[0 0.8251 0.0706 0.01 0 0.3488 0.0533 0.0012 0.0115 0.0229 0.3392 0.3269 0.2579 0.1729 0.3413 0.0038 0.0023 0.1793 0.2832 0 0]; %12:12 lhy/cca1 % y0=[0 0.8252 0 0.01 0 0.3074 0.0533 0.0012 0.0115 0 0.2622 0.375 0.4425 0 0.3412 0.0038 0.0023 0.1743 0.3734 0 0]; %12:12 lhy/cca1/gi % y0=[0 0.6995 0.2372 0.01 0 0.4512 0.0445 0.0028 0.0208 0.0796 0.3582 0.2498 0.2385 0.1604 0.2864 0.0029 0.002 0.1618 0.3287 0 0]; % 18:6 lhy/cca1 % y0=[1.18 0.825 0.076 0.01 0.89 0.174 0.06 0 0 0.023 0.37 0.32 0.066 0.087 0.357 0.626 0.205 0.24 0.07 0.24 0]; % prr5 4d 12:12 % y0=[1.72 0.825 0.073 0.01 0.92 0.19 0.06 0.02 0.013 0.02 0.37 0.33 0.067 0.087 0.36 0 0 0.22 0.09 0.227 0]; % prr7 4d 12:12 % y0=[1.67 0.825 0.07 0.01 0.9 0.174 0.06 0 0 0.02 0.34 0.33 0.07 0.09 0.36 0 0 0.212 0.09 0.235 0]; %prr5/prr7 4d 12:12 [T, Y] = ode23s(@Model,t,y0,options,q1,q2,q3,q4,p1,p2,p3,p4,p5,p6,p7,p8,p9,p10,p11,p12,p13,p14,p15,p16,m1,m2,m3,m4,m5,m6,m7,m8,m9,m10,m11,m12,m13,m14,m15,m16,m17,m18,m19,m20,m21,m22,m23,m24,m25,m26,m27,m28,n0,n1,n2,n3,n4,n5,n6,n7,n8,n9,n10,n11,n12,n13,n14,g1,g2,g3,g4,g5,g6,g7,g8,g9,g10,g11,g12,g13,g14,g15,g16,g17,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,s,p,dusk,dawn1,dusk1,dusk2,dawn2,day_numb,period); %T=T-48; figure (1) %plot(t13,Ct,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); %hold on; plot(T,Y(:,11),'k'); hold on; plot(T,Y(:,18),'k:'); hold on; plot(T,Y(:,2),'r:'); hold on; plot(T,Y(:,6),'b'); hold on; title('TOC1 mRNA-blue; TOC1 prot-black'); figure(2) plot(T,Y(:,6),'k'); hold on; plot(T,Y(:,2),'r:'); hold on; %plot(t6,Ct_m_S,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); %hold on; %plot(t4,Cl_p1,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; %plot(t5,Cl_p2,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; plot(T,Y(:,5),'m'); hold on; plot(T,Y(:,13),'b'); hold on; plot(T,Y(:,19),'g'); hold on; %plot(T,Y(:,12)+Y(:,3),'r'); %hold on; title('TOC1 mRNA Nikamuchi; LHY prot-magenta; Y mRNA-blue; Y prot-green'); %title('TOC1 mRNA Somers04 - black; Nikamuchi-blue+red; LHY prot-magenta; PRR5 prot-green'); plot(t14,Ct_m_K,'LineStyle','none','Marker','square','MarkerEdgeColor','g','MarkerFaceColor','g','MarkerSize',4); hold on; plot(t22,Ct_m_N,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); hold on; %plot(t28,Ct_mLL,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); %hold on; %plot(t23,Ct_m_N1,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; figure(3) plot(t15,Cz,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); hold on; plot(T,Y(:,12),'k'); hold on; plot(T,Y(:,3),'k:'); hold on; plot(T,Y(:,2),'r:'); hold on; plot(T,Y(:,12)+Y(:,3),'r'); hold on; plot(T,Y(:,14),'b'); hold on; plot(T,Y(:,10),'b:'); hold on; title('ZTL prot black (straight-free; dot-with GI); sum-red; GI-blue (mRNA, prot)'); %axis([0 24 0 1.2]); figure(4) plot(t16m,C9_mm,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',8); hold on; plot(t16,C9_m,'LineStyle','none','Marker','diamond','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',8); hold on; %plot(t31,C9m,'LineStyle','none','Marker','diamond','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',8); %hold on; %plot(t32,C9p,'LineStyle','none','Marker','pentagram','MarkerEdgeColor','r','MarkerFaceColor','k','MarkerSize',8); %hold on; %plot(t18,C9_m_D,'LineStyle','none','Marker','diamond','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',5); %hold on; plot(T,Y(:,15),'b'); hold on; plot(T,Y(:,2),'r:'); hold on; plot(T,Y(:,5)+Y(:,20),'m'); hold on; plot(T,Y(:,11),'g'); hold on; plot(T,Y(:,7),'k'); hold on; title('PRR9 mRNA-blue, proteins-black ; magenta-LHYtot, TOC1 prot.-green'); figure(44) %plot(t19m,C7_mm,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',8); %hold on; plot(t19n,C7_m,'LineStyle','none','Marker','diamond','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',8); hold on; %plot(t20,C7_m_D,'LineStyle','none','Marker','diamond','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',5); %hold on; plot(T,Y(:,16),'b'); hold on; plot(T,Y(:,20),'m'); hold on; plot(T,Y(:,7),'g'); hold on; plot(T,Y(:,2),'r:'); hold on; %plot(t21,C7,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',8); %hold on; plot(T,Y(:,17),'k'); hold on; title('PRR7 mRNA-blue (Nakamichi03); prot-black; magenta-LHY+LHYm; green-PRR9'); figure(5) plot(t8,Cg_m,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); hold on; plot(t17,Cg_m_L,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); hold on; plot(T,Y(:,14),'b'); hold on; plot(T,Y(:,2),'r:'); hold on; plot(T,Y(:,5),'m'); hold on; plot(T,Y(:,11),'m:'); hold on; plot(T,Y(:,10),'k:'); hold on; plot(T,Y(:,3),'k--'); hold on; plot(T,Y(:,10)+Y(:,3),'k'); hold on; %plot(t11,Cg,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); %hold on; title('GI mRNA-blue; prot-black (free-dot; ZTL-GI-dash); LHY prot-magenta(TOC1-dot)'); %title({'GI mRNA: blue-Kim07, red-Southern; PRR9 prot-green; black-GI prot';' red- GI total; LHY prot-magenta'}); figure(6) plot(t9,Cp5_m,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); hold on; plot(t12,Cp5_m_M,'LineStyle','none','Marker','diamond','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); hold on; plot(T,Y(:,8),'b'); hold on; plot(T,Y(:,9),'r'); hold on; plot(T,Y(:,20),'m:'); hold on; plot(T,Y(:,17),'g'); hold on; %plot(t10,Cp5,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','k','MarkerSize',4); %hold on; title('NA mRNA-blue; NA prot-red; PRR7-green; LHY modif-magenta'); figure(7) %plot(t30,Cl_pox,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; %plot(t30,Cl_mox,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; %plot(t4,Cl_p1,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; %plot(t5,Cl_p2,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; %plot(T,Y(:,5)+Y(:,20),'b'); %hold on; plot(T,Y(:,1),'k'); hold on; plot(T,Y(:,2),'r:'); hold on; title('LHY mRNA'); %axis([0 24 0 1.2]); plot(t2,Cl_m,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); hold on; %plot(t2,Cl_m_79,'LineStyle','none','Marker','square','MarkerEdgeColor','g','MarkerFaceColor','g','MarkerSize',4); %hold on; %plot(t26,Cc_m_79,'LineStyle','none','Marker','square','MarkerEdgeColor','g','MarkerFaceColor','g','MarkerSize',4); %hold on; %plot(t24,Cl_m_579,'LineStyle','none','Marker','square','MarkerEdgeColor','r','MarkerFaceColor','r','MarkerSize',4); %hold on; %plot(t25,Cl_m_57,'LineStyle','none','Marker','square','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); %hold on; %plot(t27,Cl_mLL,'LineStyle','none','Marker','diamond','MarkerEdgeColor','b','MarkerFaceColor','b','MarkerSize',4); %hold on; plot(T,Y(:,8),'b'); hold on; plot(T,Y(:,9),'b:'); hold on; plot(T,Y(:,16),'g--'); hold on; plot(T,Y(:,17),'g:'); hold on; plot(T,Y(:,15),'m'); hold on; plot(T,Y(:,7),'m:'); hold on; plot(T,Y(:,5),'r:'); hold on; plot(T,Y(:,20),'r--'); hold on; plot(T,Y(:,5)+Y(:,20),'r'); hold on; plot(T,Y(:,18),'g'); hold on; %plot(T,n1*Y(:,18).^b./(Y(:,18).^b+g2^b),'g'); %hold on; %plot(T,n0,'g--'); %hold on; plot(t3,Cl_m_Kieron,'LineStyle','none','Marker','diamond','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); hold on; %plot(t3m,Cl_m_Megan./0.33003,'LineStyle','none','Marker','pentagram','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',4); %hold on; %plot(t1,cLm6,'LineStyle','none','Marker','square','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',8), %hold on, %plot(t1,cLm18,'LineStyle','none','Marker','diamond','MarkerEdgeColor','k','MarkerFaceColor','k','MarkerSize',8), %hold on; %title({'LHY mRNA black (squares for Farre05, diamond - for Kieron)';'dot: green-PRR7; magenta-PRR9; NI-black'});title({'LHY mRNA black (squares for Farre05, diamond - for Kieron)';'dot: green-PRR7; magenta-PRR9; PRR5-black'}); title('LHY mRNA-black, PRR9-magenta; PRR7-green; NI-blue');