FASTQ file

FASTQ format stores sequences and Phred qualities in a single file. It is concise and compact. FASTQ is first widely used in the Sanger Institute and therefore we usually take the Sanger specification and the standard FASTQ format, or simply FASTQ format. Although Solexa/Illumina read file looks pretty much like FASTQ, they are different in that the qualities are scaled differently. In the quality string, if you can see a character with its ASCII code higher than 90, probably your file is in the Solexa/Illumina format.

help Contributor and Creators
No license specified

Views: 159   Downloads: 0

Created: 3rd Jun 2016 at 11:53

Last used: 28th May 2017 at 06:53

help Attributions


Related items

Powered by
Copyright © 2008 - 2017 The University of Manchester and HITS gGmbH