Neurospora Circadian Clock 3-variable model - sinusoidal light oscillations - PLM_52, version 1

SynthSys is the University of Edinburgh's research organisation in interdisciplinary, Synthetic and Systems Biology, founded in 2012 as the successor to the Centre for Systems Biology at Edinburgh (CSBE).

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To identify plant mathematical models useful to the UK plant systems biology community, which are currently in a variety of legacy formats and in danger of being lost

To represent these models in a declarative XML-based format, which is closer to the systems biology standard SBML To evaluate the behaviour ...

Collection of models submitted to PLaSMo by Richard Adams and automatically transferred to FAIRDOM Hub.

This model, derived from Biomodels299, is a variant of the Neurospora Circadian clock model of Leloup et al., 1999. It is supplemented with a periodic light function (SBO:0000475) that is parameterized to produce sinusoidal oscillations in the light sensitive parameter Vs with an amplitude of 5. These sinusoidal wave-form maintains entrained oscillations even with high light input, and is described in Figures 6 and 7 of Gonze and Goldbeter, 2000.Related PublicationsDidier Gonze and Albert Goldbeter ...

Data file for PLaSMo accesssion ID PLM_52, version 1

Data file for PLaSMo accesssion ID PLM_52, version 1

Data file for PLaSMo accesssion ID PLM_52, version 1

Originally submitted model file for PLaSMo accession ID PLM_52, version 1

Simplified model file for PLaSMo accession ID PLM_52, version 1 (use simplified if your software cannot read the file, e.g. Sloppy Cell)